Literature DB >> 14512362

L/D Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein-ligand complexes.

Dushyanthan Puvanendrampillai1, John B O Mitchell.   

Abstract

SUMMARY: The Protein Ligand Database (PLD) is a publicly available web-based database that aims to provide further understanding of protein-ligand interactions. The PLD contains biomolecular data including calculated binding energies, Tanimoto ligand similarity scores and protein percentage sequence similarities. The database has potential for application as a tool in molecular design. AVAILABILITY: http://www-mitchell.ch.cam.ac.uk/pld/

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Year:  2003        PMID: 14512362     DOI: 10.1093/bioinformatics/btg243

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  28 in total

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5.  Updates to Binding MOAD (Mother of All Databases): Polypharmacology Tools and Their Utility in Drug Repurposing.

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7.  Ligand-receptor interactions between surfaces: the role of binary polymer spacers.

Authors:  Gabriel S Longo; David H Thompson; I Szleifer
Journal:  Langmuir       Date:  2008-08-13       Impact factor: 3.882

8.  Computational predictions suggest that structural similarity in viral polymerases may lead to comparable allosteric binding sites.

Authors:  Jodian A Brown; Marie V Espiritu; Joel Abraham; Ian F Thorpe
Journal:  Virus Res       Date:  2016-06-01       Impact factor: 3.303

9.  Using metadynamics to understand the mechanism of calmodulin/target recognition at atomic detail.

Authors:  G Fiorin; A Pastore; P Carloni; M Parrinello
Journal:  Biophys J       Date:  2006-07-28       Impact factor: 4.033

10.  Structural descriptor database: a new tool for sequence-based functional site prediction.

Authors:  Juliana S Bernardes; Jorge H Fernandez; Ana Tereza R Vasconcelos
Journal:  BMC Bioinformatics       Date:  2008-11-25       Impact factor: 3.169

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