Literature DB >> 14504230

Rare deep-rooting Y chromosome lineages in humans: lessons for phylogeography.

Michael E Weale1, Tina Shah, Abigail L Jones, John Greenhalgh, James F Wilson, Pagbajabyn Nymadawa, David Zeitlin, Bruce A Connell, Neil Bradman, Mark G Thomas.   

Abstract

There has been considerable debate on the geographic origin of the human Y chromosome Alu polymorphism (YAP). Here we report a new, very rare deep-rooting haplogroup within the YAP clade, together with data on other deep-rooting YAP clades. The new haplogroup, found so far in only five Nigerians, is the least-derived YAP haplogroup according to currently known binary markers. However, because the interior branching order of the Y chromosome genealogical tree remains unknown, it is impossible to impute the origin of the YAP clade with certainty. We discuss the problems presented by rare deep-rooting lineages for Y chromosome phylogeography.

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Mesh：

Year:  2003        PMID： 14504230      PMCID： PMC1462739     

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  18 in total

1.  Armenian Y chromosome haplotypes reveal strong regional structure within a single ethno-national group.

Authors:  M E Weale; L Yepiskoposyan; R F Jager; N Hovhannisyan; A Khudoyan; O Burbage-Hall; N Bradman; M G Thomas
Journal:  Hum Genet       Date:  2001-10-30       Impact factor: 4.132

2.  A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes.

Authors:  Fulvio Cruciani; Piero Santolamazza; Peidong Shen; Vincent Macaulay; Pedro Moral; Antonel Olckers; David Modiano; Susan Holmes; Giovanni Destro-Bisol; Valentina Coia; Douglas C Wallace; Peter J Oefner; Antonio Torroni; L Luca Cavalli-Sforza; Rosaria Scozzari; Peter A Underhill
Journal:  Am J Hum Genet       Date:  2002-03-21       Impact factor: 11.025

3.  A nomenclature system for the tree of human Y-chromosomal binary haplogroups.

Authors: 
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

4.  Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea.

Authors:  Manfred Kayser; Silke Brauer; Gunter Weiss; Wulf Schiefenhövel; Peter Underhill; Peidong Shen; Peter Oefner; Mila Tommaseo-Ponzetta; Mark Stoneking
Journal:  Am J Hum Genet       Date:  2002-01-16       Impact factor: 11.025

5.  The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations.

Authors:  P A Underhill; G Passarino; A A Lin; P Shen; M Mirazón Lahr; R A Foley; P J Oefner; L L Cavalli-Sforza
Journal:  Ann Hum Genet       Date:  2001-01       Impact factor: 1.670

6.  Y chromosomal DNA variation and the peopling of Japan.

Authors:  M F Hammer; S Horai
Journal:  Am J Hum Genet       Date:  1995-04       Impact factor: 11.025

7.  The Y Alu polymorphism in southern African populations and its relationship to other Y-specific polymorphisms.

Authors:  A B Spurdle; M F Hammer; T Jenkins
Journal:  Am J Hum Genet       Date:  1994-02       Impact factor: 11.025

8.  Unexpectedly similar rates of nucleotide substitution found in male and female hominids.

Authors:  H B Bohossian; H Skaletsky; D C Page
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

9.  A recent insertion of an alu element on the Y chromosome is a useful marker for human population studies.

Authors:  M F Hammer
Journal:  Mol Biol Evol       Date:  1994-09       Impact factor: 16.240

10.  Genetic affinities of the Andaman Islanders, a vanishing human population.

Authors:  Kumarasamy Thangaraj; Lalji Singh; Alla G Reddy; V Raghavendra Rao; Subhash C Sehgal; Peter A Underhill; Melanie Pierson; Ian G Frame; Erika Hagelberg
Journal:  Curr Biol       Date:  2003-01-21       Impact factor: 10.834
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  16 in total

1.  Evolution and migration history of the Chinese population inferred from Chinese Y-chromosome evidence.

Authors:  Wei Deng; Baochen Shi; Xiaoli He; Zhihua Zhang; Jun Xu; Biao Li; Jian Yang; Lunjiang Ling; Chengping Dai; Boqin Qiang; Yan Shen; Runsheng Chen
Journal:  J Hum Genet       Date:  2004-06-02       Impact factor: 3.172

2.  Y chromosomal haplogroup J as a signature of the post-neolithic colonization of Europe.

Authors:  F Di Giacomo; F Luca; L O Popa; N Akar; N Anagnou; J Banyko; R Brdicka; G Barbujani; F Papola; G Ciavarella; F Cucci; L Di Stasi; L Gavrila; M G Kerimova; D Kovatchev; A I Kozlov; A Loutradis; V Mandarino; C Mammi'; E N Michalodimitrakis; G Paoli; K I Pappa; G Pedicini; L Terrenato; S Tofanelli; P Malaspina; A Novelletto
Journal:  Hum Genet       Date:  2004-08-21       Impact factor: 4.132

3.  Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area.

Authors:  Ornella Semino; Chiara Magri; Giorgia Benuzzi; Alice A Lin; Nadia Al-Zahery; Vincenza Battaglia; Liliana Maccioni; Costas Triantaphyllidis; Peidong Shen; Peter J Oefner; Lev A Zhivotovsky; Roy King; Antonio Torroni; L Luca Cavalli-Sforza; Peter A Underhill; A Silvana Santachiara-Benerecetti
Journal:  Am J Hum Genet       Date:  2004-04-06       Impact factor: 11.025

4.  Hierarchical analysis of 30 Y-chromosome SNPs in European populations.

Authors:  M Brion; B Sobrino; A Blanco-Verea; M V Lareu; A Carracedo
Journal:  Int J Legal Med       Date:  2004-04-17       Impact factor: 2.686

5.  Independent methods for evolutionary genetic dating provide insights into Y-chromosomal STR mutation rates confirming data from direct father-son transmissions.

Authors:  Francesca Luca; M Basile; F Di Giacomo; A Novelletto
Journal:  Hum Genet       Date:  2005-11-15       Impact factor: 4.132

6.  Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists.

Authors:  Sanghamitra Sengupta; Lev A Zhivotovsky; Roy King; S Q Mehdi; Christopher A Edmonds; Cheryl-Emiliane T Chow; Alice A Lin; Mitashree Mitra; Samir K Sil; A Ramesh; M V Usha Rani; Chitra M Thakur; L Luca Cavalli-Sforza; Partha P Majumder; Peter A Underhill
Journal:  Am J Hum Genet       Date:  2005-12-16       Impact factor: 11.025

7.  Evidence from Y-chromosome analysis for a late exclusively eastern expansion of the Bantu-speaking people.

Authors:  Naser Ansari Pour; Christopher A Plaster; Neil Bradman
Journal:  Eur J Hum Genet       Date:  2012-08-15       Impact factor: 4.246

8.  Palenque de San Basilio in Colombia: genetic data support an oral history of a paternal ancestry in Congo.

Authors:  Naser Ansari-Pour; Yves Moñino; Constanza Duque; Natalia Gallego; Gabriel Bedoya; Mark G Thomas; Neil Bradman
Journal:  Proc Biol Sci       Date:  2016-03-30       Impact factor: 5.349

9.  Y chromosome evidence of earliest modern human settlement in East Asia and multiple origins of Tibetan and Japanese populations.

Authors:  Hong Shi; Hua Zhong; Yi Peng; Yong-Li Dong; Xue-Bin Qi; Feng Zhang; Lu-Fang Liu; Si-Jie Tan; Runlin Z Ma; Chun-Jie Xiao; R Spencer Wells; Li Jin; Bing Su
Journal:  BMC Biol       Date:  2008-10-29       Impact factor: 7.431

10.  Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions.

Authors:  Khaled K Abu-Amero; Ali Hellani; Ana M González; Jose M Larruga; Vicente M Cabrera; Peter A Underhill
Journal:  BMC Genet       Date:  2009-09-22       Impact factor: 2.797
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