Literature DB >> 14501062

Using natural allelic diversity to evaluate gene function.

Sherry R Whitt1, Edward S Buckler.   

Abstract

Genomics has developed a wide range of tools to identify genes that play roles in specific pathways. However, relating individual genes and alleles to agronomic traits is still quite challenging. We describe how association analysis can be used to relate natural variation at candidate genes with agronomic phenotypes. Association approaches in plants can provide very high resolution and can evaluate a wide range of alleles rapidly. We discuss issues related to experimental design, germplasm sample, molecular assay, population structure, and statistical analysis necessary for association analysis in plants.

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Year:  2003        PMID： 14501062     DOI： 10.1385/1-59259-413-1:123

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  27 in total

1.  Genetic diversity and population structure of a diverse set of rice germplasm for association mapping.

Authors:  Liang Jin; Yan Lu; Peng Xiao; Mei Sun; Harold Corke; Jinsong Bao
Journal:  Theor Appl Genet       Date:  2010-04-04       Impact factor: 5.699

2.  A new test for family-based association mapping with inbred lines from plant breeding programs.

Authors:  Benjamin Stich; Albrecht E Melchinger; Hans-Peter Piepho; Martin Heckenberger; Hans P Maurer; Jochen C Reif
Journal:  Theor Appl Genet       Date:  2006-08-09       Impact factor: 5.699

3.  Population structure and linkage disequilibrium of a mini core set of maize inbred lines in China.

Authors:  Ronghuan Wang; Yongtao Yu; Jiuran Zhao; Yunsu Shi; Yanchun Song; Tianyu Wang; Yu Li
Journal:  Theor Appl Genet       Date:  2008-08-12       Impact factor: 5.699

4.  Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities.

Authors:  Zhixi Tian; Qian Qian; Qiaoquan Liu; Meixian Yan; Xinfang Liu; Changjie Yan; Guifu Liu; Zhenyu Gao; Shuzhu Tang; Dali Zeng; Yonghong Wang; Jianming Yu; Minghong Gu; Jiayang Li
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

5.  Association mapping for frost tolerance using multi-parent advanced generation inter-cross (MAGIC) population in faba bean (Vicia faba L.).

Authors:  Ahmed Sallam; Regina Martsch
Journal:  Genetica       Date:  2015-06-04       Impact factor: 1.082

6.  Detection of epistatic interactions in association mapping populations: an example from tetraploid potato.

Authors:  B Stich; C Gebhardt
Journal:  Heredity (Edinb)       Date:  2011-06-15       Impact factor: 3.821

7.  A first insight into population structure and linkage disequilibrium in the US peanut minicore collection.

Authors:  Vikas Belamkar; Michael Gomez Selvaraj; Jamie L Ayers; Paxton R Payton; Naveen Puppala; Mark D Burow
Journal:  Genetica       Date:  2011-03-27       Impact factor: 1.082

8.  Population structure in a wheat core collection and genomic loci associated with yield under contrasting environments.

Authors:  Miroslav Zorić; Dejan Dodig; Borislav Kobiljski; Steve Quarrie; Jeremy Barnes
Journal:  Genetica       Date:  2012-09-12       Impact factor: 1.082

9.  Association and linkage analysis of aluminum tolerance genes in maize.

Authors:  Allison M Krill; Matias Kirst; Leon V Kochian; Edward S Buckler; Owen A Hoekenga
Journal:  PLoS One       Date:  2010-04-01       Impact factor: 3.240

10.  Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity.

Authors:  Nengyi Zhang; Amit Gur; Yves Gibon; Ronan Sulpice; Sherry Flint-Garcia; Michael D McMullen; Mark Stitt; Edward S Buckler
Journal:  PLoS One       Date:  2010-04-01       Impact factor: 3.240
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