Literature DB >> 1446073

An estimate of the sequencing error frequency in the DNA sequence databases.

T Kristensen1, R Lopez, H Prydz.   

Abstract

We have examined vector sequences fortuitously present in the EMBL sequence database as contaminating parts of submitted sequences, and found a sequencing error frequency of 3.55% in this subset of release 27 of the database. We discuss the possibility that this value may be representative for corresponding errors in the database as a whole.

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Year:  1992        PMID： 1446073     DOI： 10.3109/10425179209020815

Source DB:  PubMed          Journal:  DNA Seq        ISSN： 1026-7913


  6 in total

Review 1.  Land plants and DNA barcodes: short-term and long-term goals.

Authors:  Mark W Chase; Nicolas Salamin; Mike Wilkinson; James M Dunwell; Rao Prasad Kesanakurthi; Nadia Haider; Nadia Haidar; Vincent Savolainen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

Review 2.  Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes.

Authors:  R S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

3.  The Genome Sequence DataBase (GSDB): improving data quality and data access.

Authors:  C Harger; M Skupski; J Bingham; A Farmer; S Hoisie; P Hraber; D Kiphart; L Krakowski; M McLeod; J Schwertfeger; G Seluja; A Siepel; G Singh; D Stamper; P Steadman; N Thayer; R Thompson; P Wargo; M Waugh; J J Zhuang; P A Schad
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  Assignment of position-specific error probability to primary DNA sequence data.

Authors:  C B Lawrence; V V Solovyev
Journal:  Nucleic Acids Res       Date:  1994-04-11       Impact factor: 16.971

5.  HOVERGEN: a database of homologous vertebrate genes.

Authors:  L Duret; D Mouchiroud; M Gouy
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

6.  Having a BLAST with bioinformatics (and avoiding BLASTphemy).

Authors:  A Pertsemlidis; J W Fondon
Journal:  Genome Biol       Date:  2001-09-27       Impact factor: 13.583
  6 in total

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