Literature DB >> 1437574

Extension product capture improves genomic sequencing and DNase I footprinting by ligation-mediated PCR.

V T Törmänen1, P M Swiderski, B E Kaplan, G P Pfeifer, A D Riggs.   

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Year:  1992        PMID： 1437574      PMCID： PMC334370          DOI： 10.1093/nar/20.20.5487

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


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  11 in total

1.  Cloning and direct sequencing of plant promoters using primer-adapter mediated PCR on DNA coupled to a magnetic solid phase.

Authors:  M Espelund; K S Jakobsen
Journal:  Biotechniques       Date:  1992-07       Impact factor: 1.993

2.  PCR-aided DNaseI footprinting of single copy gene sequences in permeabilized cells.

Authors:  R L Tanguay; G P Pfeifer; A D Riggs
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

3.  Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permeabilized cells using DNase I and ligation-mediated PCR.

Authors:  G P Pfeifer; A D Riggs
Journal:  Genes Dev       Date:  1991-06       Impact factor: 11.361

4.  In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.

Authors:  P R Mueller; B Wold
Journal:  Science       Date:  1989-11-10       Impact factor: 47.728

5.  Genomic sequencing and methylation analysis by ligation mediated PCR.

Authors:  G P Pfeifer; S D Steigerwald; P R Mueller; B Wold; A D Riggs
Journal:  Science       Date:  1989-11-10       Impact factor: 47.728

6.  Sequence of the promoter region of the gene for human X-linked 3-phosphoglycerate kinase.

Authors:  J Singer-Sam; D H Keith; K Tani; R L Simmer; L Shively; S Lindsay; A Yoshida; A D Riggs
Journal:  Gene       Date:  1984-12       Impact factor: 3.688

7.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

8.  Capture PCR: efficient amplification of DNA fragments adjacent to a known sequence in human and YAC DNA.

Authors:  M Lagerström; J Parik; H Malmgren; J Stewart; U Pettersson; U Landegren
Journal:  PCR Methods Appl       Date:  1991-11

9.  Oligodeoxyribonucleotides containing 1,3-propanediol as nucleoside substitute.

Authors:  F Seela; K Kaiser
Journal:  Nucleic Acids Res       Date:  1987-04-10       Impact factor: 16.971

10.  Mapping of UV photoproducts within ras proto-oncogenes in UV-irradiated cells: correlation with mutations in human skin cancer.

Authors:  V T Törmänen; G P Pfeifer
Journal:  Oncogene       Date:  1992-09       Impact factor: 9.867
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  9 in total

1.  Breaksite batch mapping, a rapid method for assay and identification of DNA breaksites in mammalian cells.

Authors:  Q Kong; N Maizels
Journal:  Nucleic Acids Res       Date:  2001-03-15       Impact factor: 16.971

2.  An improved protocol for genomic sequencing and footprinting by ligation-mediated PCR.

Authors:  J P Quivy; P B Becker
Journal:  Nucleic Acids Res       Date:  1993-06-11       Impact factor: 16.971

3.  A modified protocol for in vivo footprinting by ligation-mediated polymerase chain reaction.

Authors:  D Dimitrova; M Giacca; A Falaschi
Journal:  Nucleic Acids Res       Date:  1994-02-11       Impact factor: 16.971

4.  In vivo DNase I-mediated footprinting analysis along the human bradykinin B1 receptor (BDKRB1) gene promoter: evidence for cell-specific regulation.

Authors:  Martin Angers; Régen Drouin; Magdalena Bachvarova; Isabelle Paradis; Brad Bissell; Makoto Hiromura; Anny Usheva; Dimcho Bachvarov
Journal:  Biochem J       Date:  2005-07-01       Impact factor: 3.857

5.  Nucleosomes are translationally positioned on the active allele and rotationally positioned on the inactive allele of the HPRT promoter.

Authors:  C Chen; T P Yang
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

6.  In vivo protein-DNA interactions at the c-jun promoter: preformed complexes mediate the UV response.

Authors:  D Rozek; G P Pfeifer
Journal:  Mol Cell Biol       Date:  1993-09       Impact factor: 4.272

7.  Characterization of novel parent-specific epigenetic modifications upstream of the imprinted mouse H19 gene.

Authors:  P E Szabó; G P Pfeifer; J R Mann
Journal:  Mol Cell Biol       Date:  1998-11       Impact factor: 4.272

8.  Tissue-specific in vivo protein-DNA interactions at the promoter region of the Xenopus 63 kDa keratin gene during metamorphosis.

Authors:  D Warshawsky; L Miller
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

9.  Rapid, solid-phase based automated analysis of chromatin structure and transcription factor occupancy in living eukaryotic cells.

Authors:  Richard Ingram; Hiromi Tagoh; Arthur D Riggs; Constanze Bonifer
Journal:  Nucleic Acids Res       Date:  2005-01-11       Impact factor: 16.971
  9 in total

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