Literature DB >> 1418817

Folding, aggregation and molecular recognition in peptides.

I L Karle1.   

Abstract

In past years, most of the X-ray structure determinations of oligopeptides were for cyclic peptides or for short linear peptides. Longer peptides usually presented many difficulties in obtaining suitable crystals since the molecules are intrinsically very flexible. More recently, it has been appreciated that the aminoisobutyric acid residue (Aib), which occurs naturally in many peptides of microbial origin, initiates helix folding. Several score of 7- to 15-residue linear peptides containing Aib have been synthesized, crystallized and had their structures determined to high resolution. Many of the peptide structures have been determined in more than one crystalline form. These peptide structures have yielded a plethora of information on types of helices, modes of hydration, water penetration into helical backbones, helices bent by Pro residues, parallel and antiparallel association of helices, effects of Leu residues on association of peptides, an example of a zipper assembly by side chains, and an example of a possible ion channel with a gating mechanism.

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Year:  1992        PMID: 1418817     DOI: 10.1107/s0108768192000673

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  7 in total

1.  Infinite pleated beta -sheet formed by the beta-hairpin Boc-beta-Phe-beta-Phe-D-Pro-Gly-beta-Phe-beta-Phe-OMe.

Authors:  Isabella Karle; Hosahudya N Gopi; Padmanabhan Balaram
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

Review 2.  Geometrical frustration as a potential design principle for peptide-based assemblies.

Authors:  Tao Jiang; Elizabeth L Magnotti; Vincent P Conticello
Journal:  Interface Focus       Date:  2017-10-20       Impact factor: 3.906

3.  Dioxane contributes to the altered conformation and oligomerization state of a designed engrailed homeodomain variant.

Authors:  Geoffrey K Hom; J Kyle Lassila; Leonard M Thomas; Stephen L Mayo
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

4.  Alamethicin and related peptaibols--model ion channels.

Authors:  M S Sansom
Journal:  Eur Biophys J       Date:  1993       Impact factor: 1.733

5.  Facile transition between 3(10)- and alpha-helix: structures of 8-, 9-, and 10-residue peptides containing the -(Leu-Aib-Ala)2-Phe-Aib- fragment.

Authors:  I L Karle; J L Flippen-Anderson; R Gurunath; P Balaram
Journal:  Protein Sci       Date:  1994-09       Impact factor: 6.725

6.  Observation of glycine zipper and unanticipated occurrence of ambidextrous helices in the crystal structure of a chiral undecapeptide.

Authors:  Rudresh Acharya; Madhvi Gupta; Suryanarayanarao Ramakumar; Udupi A Ramagopal; Virander S Chauhan
Journal:  BMC Struct Biol       Date:  2007-08-01

7.  Deciphering the Structural Enigma of HLA Class-II Binding Peptides for Enhanced Immunoinformatics-based Prediction of Vaccine Epitopes.

Authors:  Deepyan Chatterjee; Pragya Priyadarshini; Deepjyoti K Das; Khurram Mushtaq; Balvinder Singh; Javed N Agrewala
Journal:  J Proteome Res       Date:  2020-10-26       Impact factor: 4.466

  7 in total

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