Literature DB >> 1409594

Proposed acquisition of an animal protein domain by bacteria.

P Bork1, R F Doolittle.   

Abstract

A systematic screen of a protein sequence data base confirms that the fibronectin type III (Fn3) domain is widely distributed among animal proteins and occurs also in several bacterial carbohydrate-splitting enzymes. The motif has yet to be identified in proteins from plants or fungi. All indications are that the bacterial sequences are much too similar to the animal type to be the result of conventional vertical descent. Rather, it is likely that the bacterial units were initially acquired from an animal source and are being spread further by horizontal transfers between distantly related bacteria.

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Year:  1992        PMID: 1409594      PMCID: PMC50050          DOI: 10.1073/pnas.89.19.8990

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins.

Authors:  P Bork; C Sander; A Valencia
Journal:  Proc Natl Acad Sci U S A       Date:  1992-08-15       Impact factor: 11.205

Review 2.  Stein and Moore Award address. Reconstructing history with amino acid sequences.

Authors:  R F Doolittle
Journal:  Protein Sci       Date:  1992-02       Impact factor: 6.725

3.  Biochemical and genetic analysis of a maltopentaose-producing amylase from an alkaliphilic gram-positive bacterium.

Authors:  A Candussio; G Schmid; A Böck
Journal:  Eur J Biochem       Date:  1990-07-20

4.  Nearest neighbor procedure for relating progressively aligned amino acid sequences.

Authors:  R F Doolittle; D F Feng
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

5.  Distinguishing homologous from analogous proteins.

Authors:  W M Fitch
Journal:  Syst Zool       Date:  1970-06

6.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

7.  Progressive sequence alignment as a prerequisite to correct phylogenetic trees.

Authors:  D F Feng; R F Doolittle
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

8.  The Trypanosoma cruzi neuraminidase contains sequences similar to bacterial neuraminidases, YWTD repeats of the low density lipoprotein receptor, and type III modules of fibronectin.

Authors:  M E Pereira; J S Mejia; E Ortega-Barria; D Matzilevich; R P Prioli
Journal:  J Exp Med       Date:  1991-07-01       Impact factor: 14.307

9.  Human growth hormone and extracellular domain of its receptor: crystal structure of the complex.

Authors:  A M de Vos; M Ultsch; A A Kossiakoff
Journal:  Science       Date:  1992-01-17       Impact factor: 47.728

10.  1H NMR assignment and secondary structure of the cell adhesion type III module of fibronectin.

Authors:  M Baron; A L Main; P C Driscoll; H J Mardon; J Boyd; I D Campbell
Journal:  Biochemistry       Date:  1992-02-25       Impact factor: 3.162

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  61 in total

Review 1.  The micro-mechanics of single molecules studied with atomic force microscopy.

Authors:  T E Fisher; P E Marszalek; A F Oberhauser; M Carrion-Vazquez; J M Fernandez
Journal:  J Physiol       Date:  1999-10-01       Impact factor: 5.182

2.  The dynamic dialogue between cells and matrices: implications of fibronectin's elasticity.

Authors:  R O Hynes
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

3.  Crystal structure of a heparin- and integrin-binding segment of human fibronectin.

Authors:  A Sharma; J A Askari; M J Humphries; E Y Jones; D I Stuart
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

4.  HYR, an extracellular module involved in cellular adhesion and related to the immunoglobulin-like fold.

Authors:  I Callebaut; D Gilgès; I Vigon; J P Mornon
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

5.  Chimeric fibronectin matrix mimetic as a functional growth- and migration-promoting adhesive substrate.

Authors:  Daniel C Roy; Susan J Wilke-Mounts; Denise C Hocking
Journal:  Biomaterials       Date:  2010-12-24       Impact factor: 12.479

6.  Miles to go (mtgo) encodes FNDC3 proteins that interact with the chaperonin subunit CCT3 and are required for NMJ branching and growth in Drosophila.

Authors:  Adeela Syed; Tamás Lukacsovich; Miles Pomeroy; A Jane Bardwell; Gentry Thomas Decker; Katrina G Waymire; Judith Purcell; Weijian Huang; James Gui; Emily M Padilla; Cindy Park; Antor Paul; Thai Bin T Pham; Yanete Rodriguez; Stephen Wei; Shane Worthge; Ronak Zebarjedi; Bing Zhang; Lee Bardwell; J Lawrence Marsh; Grant R MacGregor
Journal:  Dev Biol       Date:  2018-10-25       Impact factor: 3.582

7.  Tracing the spread of fibronectin type III domains in bacterial glycohydrolases.

Authors:  E Little; P Bork; R F Doolittle
Journal:  J Mol Evol       Date:  1994-12       Impact factor: 2.395

8.  Constraint and Contingency Pervade the Emergence of Novel Phenotypes in Complex Metabolic Systems.

Authors:  Sayed-Rzgar Hosseini; Andreas Wagner
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

9.  Lateral transfer of genes and gene fragments in prokaryotes.

Authors:  Cheong Xin Chan; Robert G Beiko; Aaron E Darling; Mark A Ragan
Journal:  Genome Biol Evol       Date:  2009-11-04       Impact factor: 3.416

10.  Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution.

Authors:  Daniel J Rigden; Michael Y Galperin
Journal:  Bioinformatics       Date:  2008-06-17       Impact factor: 6.937

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