Literature DB >> 1398058

Simulation study of a multigene family, with special reference to the evolution of compensatory advantageous mutations.

C J Basten1, T Ohta.   

Abstract

We investigate the evolution of a multigene family incorporating the forces of drift, mutation, gene conversion, unequal crossing over and selection. The use of simulation studies is required due to the complexity of the model. Selection is modeled in two modes: positive selection as a function of the number of different beneficial alleles and negative selection against deleterious alleles. We assume that gene conversion is unbiased, and that all mutations are initially deleterious. Compensation between mutants creates beneficial and neutral alleles, and allowances are made for compensatory mutations either within or between the members of a multigene family. We find that gene conversion can enhance the rate of acquisition of compensatory advantageous mutations when genes are redundant.

Mesh:

Year:  1992        PMID: 1398058      PMCID: PMC1205123     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  19 in total

1.  Gene conversion tracts stimulated by HOT1-promoted transcription are long and continuous.

Authors:  K Voelkel-Meiman; G S Roeder
Journal:  Genetics       Date:  1990-12       Impact factor: 4.562

2.  Duplication of the gamma-globin gene mediated by L1 long interspersed repetitive elements in an early ancestor of simian primates.

Authors:  D H Fitch; W J Bailey; D A Tagle; M Goodman; L Sieu; J L Slightom
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-15       Impact factor: 11.205

3.  Gene conversions and their relation to homologous chromosome pairing.

Authors:  O Smithies; P A Powers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1986-01-29       Impact factor: 6.237

4.  Time for spreading of compensatory mutations under gene duplication.

Authors:  T Ohta
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

5.  A hyperconversion mechanism generates the chicken light chain preimmune repertoire.

Authors:  C A Reynaud; V Anquez; H Grimal; J C Weill
Journal:  Cell       Date:  1987-02-13       Impact factor: 41.582

6.  Evolution by gene duplication and compensatory advantageous mutations.

Authors:  T Ohta
Journal:  Genetics       Date:  1988-11       Impact factor: 4.562

Review 7.  The evolution of multigene families: human haptoglobin genes.

Authors:  N Maeda; O Smithies
Journal:  Annu Rev Genet       Date:  1986       Impact factor: 16.830

8.  Spontaneous unequal exchange in the rosy region of Drosophila melanogaster.

Authors:  W M Gelbart; A Chovnick
Journal:  Genetics       Date:  1979-07       Impact factor: 4.562

9.  Evolution of the rat kallikrein gene family: gene conversion leads to functional diversity.

Authors:  D R Wines; J M Brady; E M Southard; R J MacDonald
Journal:  J Mol Evol       Date:  1991-06       Impact factor: 2.395

10.  Sequence identity in an early chorion multigene family is the result of localized gene conversion.

Authors:  B L Hibner; W D Burke; T H Eickbush
Journal:  Genetics       Date:  1991-07       Impact factor: 4.562

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  12 in total

1.  What happens to genes in duplicated genomes.

Authors:  Elizabeth A Kellogg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-07       Impact factor: 11.205

2.  Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons.

Authors:  R C Cronn; X Zhao; A H Paterson; J F Wendel
Journal:  J Mol Evol       Date:  1996-06       Impact factor: 2.395

3.  Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution.

Authors:  J H Nadeau; D Sankoff
Journal:  Genetics       Date:  1997-11       Impact factor: 4.562

4.  Highly repetitive DNA families restricted to germ cells in a Japanese hagfish (Eptatretus burgeri): a hierarchical and mosaic structure in eliminated chromosomes.

Authors:  S Kubota; J Takano; R Tsuneishi; S Kobayakawa; N Fujikawa; M Nabeyama; S Kohno
Journal:  Genetica       Date:  2001       Impact factor: 1.082

5.  Two classes of 5S rDNA unit arrays of the silver fir, Abies alba Mill.: structure, localization and evolution.

Authors:  Visnja Besendorfer; Iva Krajacić-Sokol; Srećko Jelenić; Jasna Puizina; Jelena Mlinarec; Tonka Sviben; Drazena Papes
Journal:  Theor Appl Genet       Date:  2005-01-19       Impact factor: 5.699

6.  How often do duplicated genes evolve new functions?

Authors:  J B Walsh
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

7.  Pattern of nucleotide substitutions in growth hormone-prolactin gene family: a paradigm for evolution by gene duplication.

Authors:  T Ohta
Journal:  Genetics       Date:  1993-08       Impact factor: 4.562

8.  Gene conversion vs point mutation in generating variability at the antigen recognition site of major histocompatibility complex loci.

Authors:  T Ohta
Journal:  J Mol Evol       Date:  1995-08       Impact factor: 2.395

9.  A Bayesian model for gene family evolution.

Authors:  Liang Liu; Lili Yu; Venugopal Kalavacharla; Zhanji Liu
Journal:  BMC Bioinformatics       Date:  2011-11-01       Impact factor: 3.169

10.  A generalized birth and death process for modeling the fates of gene duplication.

Authors:  Jing Zhao; Ashley I Teufel; David A Liberles; Liang Liu
Journal:  BMC Evol Biol       Date:  2015-12-08       Impact factor: 3.260

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