Literature DB >> 13680523

Genomic imprinting and linkage test for quantitative-trait Loci in extended pedigrees.

Sanjay Shete1, Xiaojun Zhou, Christopher I Amos.   

Abstract

Genomic imprinting is a mechanism in which only one of the two copies of a gene is expressed. Some genes that affect development and behavior in mammals are known to be imprinted. Deregulation of imprinted genes has been found in a number of human diseases. Incorporating imprinting information into linkage analysis results in a more powerful test for linkage. Here, we propose an efficient method to test for linkage and imprinting of quantitative traits in extended pedigrees. We compared the results obtained by using the extended-pedigree-analysis approach proposed in this study with other existing approaches. We found that the proposed method is more powerful and uses extended-pedigree information most efficiently.

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Mesh:

Year:  2003        PMID: 13680523      PMCID: PMC1180613          DOI: 10.1086/378592

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  15 in total

1.  Assessment of parent-of-origin effects in linkage analysis of quantitative traits.

Authors:  R L Hanson; S Kobes; R S Lindsay; W C Knowler
Journal:  Am J Hum Genet       Date:  2001-03-13       Impact factor: 11.025

Review 2.  Genomic imprinting: parental influence on the genome.

Authors:  W Reik; J Walter
Journal:  Nat Rev Genet       Date:  2001-01       Impact factor: 53.242

3.  Parametric and nonparametric multipoint linkage analysis with imprinting and two-locus-trait models: application to mite sensitization.

Authors:  K Strauch; R Fimmers; T Kurz; K A Deichmann; T F Wienker; M P Baur
Journal:  Am J Hum Genet       Date:  2000-05-04       Impact factor: 11.025

4.  Testing for genetic linkage in families by a variance-components approach in the presence of genomic imprinting.

Authors:  Sanjay Shete; Christopher I Amos
Journal:  Am J Hum Genet       Date:  2002-02-08       Impact factor: 11.025

Review 5.  Mechanisms of genomic imprinting.

Authors:  K Pfeifer
Journal:  Am J Hum Genet       Date:  2000-09-05       Impact factor: 11.025

6.  A susceptibility gene for psoriatic arthritis maps to chromosome 16q: evidence for imprinting.

Authors:  Ari Karason; Johann E Gudjonsson; Ruchi Upmanyu; Arna A Antonsdottir; Valdimar B Hauksson; E Hjaltey Runasdottir; Hjortur H Jonsson; Daniel F Gudbjartsson; Michael L Frigge; Augustine Kong; Kari Stefansson; Helgi Valdimarsson; Jeffrey R Gulcher
Journal:  Am J Hum Genet       Date:  2002-12-09       Impact factor: 11.025

Review 7.  Imprinting and disease.

Authors:  Jörn Walter; Martina Paulsen
Journal:  Semin Cell Dev Biol       Date:  2003-02       Impact factor: 7.727

8.  Effect of Box-Cox transformation on power of Haseman-Elston and maximum-likelihood variance components tests to detect quantitative trait Loci.

Authors:  C J Etzel; S Shete; T M Beasley; J R Fernandez; D B Allison; C I Amos
Journal:  Hum Hered       Date:  2003       Impact factor: 0.444

Review 9.  Chromatin modification and epigenetic reprogramming in mammalian development.

Authors:  En Li
Journal:  Nat Rev Genet       Date:  2002-09       Impact factor: 53.242

Review 10.  Genetic analysis of simulated oligogenic traits in nuclear and extended pedigrees: summary of GAW10 contributions.

Authors:  E M Wijsman; C I Amos
Journal:  Genet Epidemiol       Date:  1997       Impact factor: 2.135

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  15 in total

1.  Bayesian mapping of genome-wide epistatic imprinted loci for quantitative traits.

Authors:  Shize Li; Xin Wang; Jiahan Li; Tianfu Yang; Lingjiang Min; Yang Liu; Min Lin; Runqing Yang
Journal:  Theor Appl Genet       Date:  2012-02-16       Impact factor: 5.699

2.  Ordered genotypes: an extended ITO method and a general formula for genetic covariance.

Authors:  Feng Dai; Daniel E Weeks
Journal:  Am J Hum Genet       Date:  2006-04-25       Impact factor: 11.025

3.  Power calculations for likelihood ratio tests for offspring genotype risks, maternal effects, and parent-of-origin (POO) effects in the presence of missing parental genotypes when unaffected siblings are available.

Authors:  E Rampersaud; R W Morris; C R Weinberg; M C Speer; E R Martin
Journal:  Genet Epidemiol       Date:  2007-01       Impact factor: 2.135

4.  Bayesian model selection for characterizing genomic imprinting effects and patterns.

Authors:  Runqing Yang; Xin Wang; Zeyuan Wu; Daniel R Prows; Min Lin
Journal:  Bioinformatics       Date:  2009-10-30       Impact factor: 6.937

5.  Imprinting detection by extending a regression-based QTL analysis method.

Authors:  Olga Y Gorlova; Lei Lei; Dakai Zhu; Shih-Feng Weng; Sanjay Shete; Yiqun Zhang; Wei-Dong Li; R Arlen Price; Christopher I Amos
Journal:  Hum Genet       Date:  2007-06-12       Impact factor: 4.132

6.  Detection of parent-of-origin effects for quantitative traits in complete and incomplete nuclear families with multiple children.

Authors:  Feng He; Ji-Yuan Zhou; Yue-Qing Hu; Fengzhu Sun; Jingyuan Yang; Shili Lin; Wing Kam Fung
Journal:  Am J Epidemiol       Date:  2011-06-01       Impact factor: 4.897

7.  Methods for detecting interactions between imprinted genes and environmental exposures using birth cohort designs with mother-offspring pairs.

Authors:  Shuang Wang; Zhaoxia Yu; Rachel L Miller; Deliang Tang; Frederica P Perera
Journal:  Hum Hered       Date:  2011-07-20       Impact factor: 0.444

8.  An extension of the transmission disequilibrium test incorporating imprinting.

Authors:  Yue-Qing Hu; Ji-Yuan Zhou; Wing K Fung
Journal:  Genetics       Date:  2006-12-28       Impact factor: 4.562

9.  An efficient study design to test parent-of-origin effects in family trios.

Authors:  Xiaobo Yu; Gao Chen; Rui Feng
Journal:  Genet Epidemiol       Date:  2017-07-20       Impact factor: 2.135

Review 10.  Investigating parent of origin effects in studies of type 2 diabetes and obesity.

Authors:  Evadnie Rampersaud; Braxton D Mitchell; Adam C Naj; Toni I Pollin
Journal:  Curr Diabetes Rev       Date:  2008-11
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