Literature DB >> 13678150

Enhancing results of microarray hybridizations through microagitation.

Andreas Toegl1, Roland Kirchner, Christoph Gauer, Achim Wixforth.   

Abstract

Protein and DNA microarrays have become a standard tool in proteomics/genomics research. In order to guarantee fast and reproducible hybridization results, the diffusion limit must be overcome. Surface acoustic wave (SAW) micro-agitation chips efficiently agitate the smallest sample volumes (down to 10 microL and below) without introducing any dead volume. The advantages are reduced reaction time, increased signal-to-noise ratio, improved homogeneity across the microarray, and better slide-to-slide reproducibility. The SAW micromixer chips are the heart of the Advalytix Array-Booster, which is compatible with all microarrays based on the microscope slide format.

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Year:  2003        PMID: 13678150      PMCID: PMC2279950     

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  6 in total

1.  Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays.

Authors:  M D Kane; T A Jatkoe; C R Stumpf; J Lu; J D Thomas; S J Madore
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971

Review 2.  A concise guide to cDNA microarray analysis.

Authors:  P Hegde; R Qi; K Abernathy; C Gay; S Dharap; R Gaspard; J E Hughes; E Snesrud; N Lee; J Quackenbush
Journal:  Biotechniques       Date:  2000-09       Impact factor: 1.993

3.  Simulation of biomolecular diffusion and complex formation.

Authors:  S A Allison; S H Northrup; J A McCammon
Journal:  Biophys J       Date:  1986-01       Impact factor: 4.033

4.  The biophysics of DNA hybridization with immobilized oligonucleotide probes.

Authors:  V Chan; D J Graves; S E McKenzie
Journal:  Biophys J       Date:  1995-12       Impact factor: 4.033

5.  Manufacturing DNA microarrays of high spot homogeneity and reduced background signal.

Authors:  F Diehl; S Grahlmann; M Beier; J D Hoheisel
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

6.  RNA expression in the early characterization of hepatotoxicants in Wistar rats by high-density DNA microarrays.

Authors:  S J Bulera; S M Eddy; E Ferguson; T A Jatkoe; J F Reindel; M R Bleavins; F A De La Iglesia
Journal:  Hepatology       Date:  2001-05       Impact factor: 17.425

  6 in total
  10 in total

1.  Biofunctionalized nanoslits for wash-free and spatially resolved real-time sensing with full target capture.

Authors:  Thierry Leïchlé; Chia-Fu Chou
Journal:  Biomicrofluidics       Date:  2015-05-13       Impact factor: 2.800

2.  BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.

Authors:  Archana N Rao; David W Grainger
Journal:  Biomater Sci       Date:  2014-04-01       Impact factor: 6.843

3.  Nonvolatile copolymer compositions for fabricating gel element microarrays.

Authors:  Julia B Golova; Boris K Chernov; Alexander N Perov; Jennifer Reynolds; Yvonne L Linger; Alexander Kukhtin; Darrell P Chandler
Journal:  Anal Biochem       Date:  2011-10-05       Impact factor: 3.365

4.  Real-time fluorescent image analysis of DNA spot hybridization kinetics to assess microarray spot heterogeneity.

Authors:  Archana N Rao; Christopher K Rodesch; David W Grainger
Journal:  Anal Chem       Date:  2012-10-29       Impact factor: 6.986

5.  A comparison of hybridization efficiency between flat glass and channel glass solid supports.

Authors:  Gabriel Betanzos-Cabrera; Brent W Harker; Mitchel J Doktycz; James L Weber; Kenneth L Beattie
Journal:  Mol Biotechnol       Date:  2007-09-06       Impact factor: 2.695

6.  Systematic spatial bias in DNA microarray hybridization is caused by probe spot position-dependent variability in lateral diffusion.

Authors:  Doris Steger; David Berry; Susanne Haider; Matthias Horn; Michael Wagner; Roman Stocker; Alexander Loy
Journal:  PLoS One       Date:  2011-08-17       Impact factor: 3.240

7.  Miniaturized protein microarray with internal calibration as point-of-care device for diagnosis of neonatal sepsis.

Authors:  Patricia Buchegger; Ursula Sauer; Hedvig Toth-Székély; Claudia Preininger
Journal:  Sensors (Basel)       Date:  2012-02-03       Impact factor: 3.576

8.  A microarray-based approach to evaluate the functional significance of protein-binding motifs.

Authors:  Michael D Sinzinger; Yi-Da Chung; Merel J W Adjobo-Hermans; Roland Brock
Journal:  Anal Bioanal Chem       Date:  2016-02-18       Impact factor: 4.142

9.  A Study on AIN Film-Based SAW Attenuation in Liquids and Their Potential as Liquid Ethanol Sensors.

Authors:  Yong Wang; Zhonggui Xu; Yinshen Wang; Jin Xie
Journal:  Sensors (Basel)       Date:  2017-08-07       Impact factor: 3.576

10.  Controllable Acoustic Mixing of Fluids in Microchannels for the Fabrication of Therapeutic Nanoparticles.

Authors:  Christoph Westerhausen; Lukas G Schnitzler; Dominik Wendel; Rafał Krzysztoń; Ulrich Lächelt; Ernst Wagner; Joachim O Rädler; Achim Wixforth
Journal:  Micromachines (Basel)       Date:  2016-09-02       Impact factor: 2.891

  10 in total

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