Literature DB >> 10997270

A concise guide to cDNA microarray analysis.

P Hegde1, R Qi, K Abernathy, C Gay, S Dharap, R Gaspard, J E Hughes, E Snesrud, N Lee, J Quackenbush.   

Abstract

Microarray expression analysis has become one of the most widely used functional genomics tools. Efficient application of this technique requires the development of robust and reproducible protocols. We have optimized all aspects of the process, including PCR amplification of target cDNA clones, microarray printing, probe labeling and hybridization, and have developed strategies for data normalization and analysis.

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Year:  2000        PMID： 10997270     DOI： 10.2144/00293bi01

Source DB:  PubMed          Journal:  Biotechniques        ISSN： 0736-6205            Impact factor:   1.993


  251 in total

Review 1.  Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium.

Authors:  David Finkelstein; Rob Ewing; Jeremy Gollub; Fredrik Sterky; J Michael Cherry; Shauna Somerville
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Robust and efficient synthetic method for forming DNA microarrays.

Authors:  P L Dolan; Y Wu; L K Ista; R L Metzenberg; M A Nelson; G P Lopez
Journal:  Nucleic Acids Res       Date:  2001-11-01       Impact factor: 16.971

3.  DNA exhibits multi-stranded binding recognition on glass microarrays.

Authors:  S J Shi; A Scheffer; E Bjeldanes; M A Reynolds; L J Arnold
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

4.  Gene expression profiling of clear cell renal cell carcinoma: gene identification and prognostic classification.

Authors:  M Takahashi; D R Rhodes; K A Furge; H Kanayama ; S Kagawa; B B Haab; B T Teh
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-07       Impact factor: 11.205

5.  Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range.

Authors:  Aimée M Dudley; John Aach; Martin A Steffen; George M Church
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

6.  Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  Keith R Shockley; Donald E Ward; Swapnil R Chhabra; Shannon B Conners; Clemente I Montero; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

7.  Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize.

Authors:  Mikio Nakazono; Fang Qiu; Lisa A Borsuk; Patrick S Schnable
Journal:  Plant Cell       Date:  2003-03       Impact factor: 11.277

8.  Three color cDNA microarrays: quantitative assessment through the use of fluorescein-labeled probes.

Authors:  Martin J Hessner; Xujing Wang; Katie Hulse; Lisa Meyer; Yan Wu; Steven Nye; Sun-Wei Guo; Soumitra Ghosh
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

9.  Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays.

Authors:  M Juanita Martinez; Anthony D Aragon; Angelina L Rodriguez; Jose M Weber; Jerilyn A Timlin; Michael B Sinclair; David M Haaland; Margaret Werner-Washburne
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

10.  The transcriptional activity of human Chromosome 22.

Authors:  John L Rinn; Ghia Euskirchen; Paul Bertone; Rebecca Martone; Nicholas M Luscombe; Stephen Hartman; Paul M Harrison; F Kenneth Nelson; Perry Miller; Mark Gerstein; Sherman Weissman; Michael Snyder
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361
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