Literature DB >> 1358877

Reaction mechanism of glutamate racemase, a pyridoxal phosphate-independent amino acid racemase.

S Y Choi1, N Esaki, T Yoshimura, K Soda.   

Abstract

Glutamate racemase of Pediococcus pentosaceus contained no cofactor, and was completely inactivated by a thiol reagent. The role of a cysteine residue in the enzyme reaction was studied by chemical modification. The modification of this cysteine residue resulted in a concomitant loss of activity. DL-Glutamate protected the enzyme from inactivation. The inactivated enzyme was reactivated by addition of dithiothreitol. The racemization in 2H2O showed an overshoot in the optical rotation of glutamate before the substrate was completely racemized. This indicates that the removal of alpha-hydrogen is the rate determining step. During the racemization of D- or L-glutamate in 3H2O, tritium was incorporated preferentially into the product. Glutamate is racemized by the enzyme probably through a two base mechanism.

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Year:  1992        PMID: 1358877     DOI: 10.1093/oxfordjournals.jbchem.a123853

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  13 in total

1.  Molecular cloning and enzymological characterization of pyridoxal 5'-phosphate independent aspartate racemase from hyperthermophilic archaeon Thermococcus litoralis DSM 5473.

Authors:  Tsubasa Washio; Shiro Kato; Tadao Oikawa
Journal:  Extremophiles       Date:  2016-07-20       Impact factor: 2.395

2.  Role of chirality in olfactory-directed behavior: Aggregation of pine engraver beetles in the genusIps (Coleoptera: Scolytidae).

Authors:  S J Seybold
Journal:  J Chem Ecol       Date:  1993-08       Impact factor: 2.626

3.  Distinct pathways for modification of the bacterial cell wall by non-canonical D-amino acids.

Authors:  Felipe Cava; Miguel A de Pedro; Hubert Lam; Brigid M Davis; Matthew K Waldor
Journal:  EMBO J       Date:  2011-07-26       Impact factor: 11.598

4.  TK1211 Encodes an Amino Acid Racemase towards Leucine and Methionine in the Hyperthermophilic Archaeon Thermococcus kodakarensis.

Authors:  Ren-Chao Zheng; Xia-Feng Lu; Hiroya Tomita; Shin-Ichi Hachisuka; Yu-Guo Zheng; Haruyuki Atomi
Journal:  J Bacteriol       Date:  2021-03-08       Impact factor: 3.490

5.  Glutamate Racemase Mutants of Bacillus anthracis.

Authors:  So-Young Oh; Stefan G Richter; Dominique M Missiakas; Olaf Schneewind
Journal:  J Bacteriol       Date:  2015-03-16       Impact factor: 3.490

6.  Bacterial glutamate racemase has high sequence similarity with myoglobins and forms an equimolar inactive complex with hemin.

Authors:  S Y Choi; N Esaki; M Ashiuchi; T Yoshimura; K Soda
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-11       Impact factor: 11.205

7.  Staphylococcus haemolyticus contains two D-glutamic acid biosynthetic activities, a glutamate racemase and a D-amino acid transaminase.

Authors:  M J Pucci; J A Thanassi; H T Ho; P J Falk; T J Dougherty
Journal:  J Bacteriol       Date:  1995-01       Impact factor: 3.490

8.  The Escherichia coli Dga (MurI) protein shares biological activity and structural domains with the Pediococcus pentosaceus glutamate racemase.

Authors:  M J Pucci; J Novotny; L F Discotto; T J Dougherty
Journal:  J Bacteriol       Date:  1994-01       Impact factor: 3.490

Review 9.  Emerging knowledge of regulatory roles of D-amino acids in bacteria.

Authors:  Felipe Cava; Hubert Lam; Miguel A de Pedro; Matthew K Waldor
Journal:  Cell Mol Life Sci       Date:  2010-12-14       Impact factor: 9.261

Review 10.  Glutamate racemase as a target for drug discovery.

Authors:  Stewart L Fisher
Journal:  Microb Biotechnol       Date:  2008-05-11       Impact factor: 5.813

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