Literature DB >> 1353054

A 530kb YAC contig tightly linked to the Friedreich ataxia locus contains five CpG clusters and a new highly polymorphic microsatellite.

R Fujita1, G Sirugo, F Duclos, H Abderrahim, D Le Paslier, D Cohen, B H Brownstein, D Schlessinger, J L Mandel, M Koenig.   

Abstract

Friedreich ataxia (FA) is a severe autosomal recessive neurodegenerative disease. The defective gene has been previously assigned to chromosome 9q13-q21 by demonstration of tight linkage to the two independent loci D9S15 and D9S5. Linkage data indicate that FRDA is at less than 1 cM from both markers. Previous physical mapping has shown that probes defining D9S15 (MCT112) and D9S5 (26P) are less than 260 kb apart and are surrounded by at least six CpG clusters within 450 kb, which might indicate the presence of "candidate" genes for FA. We isolated and characterized a 530 kb YAC (yeast artificial chromosome) contig that contains five of the CpG clusters. The YACs were used to search for new polymorphic markers needed to map FRDA precisely with respect to the cloned segment. In particular, we found a (CA)n microsatellite polymorphism, GS4, that detects 13 alleles with a PIC value of 0.83 and allows the definition of haplotypes extending over 310 kb when used in combination with polymorphic markers at D9S5 and D9S15.

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Year:  1992        PMID: 1353054     DOI: 10.1007/bf00219179

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  25 in total

1.  A 230kb cosmid walk in the Duchenne muscular dystrophy gene: detection of a conserved sequence and of a possible deletion prone region.

Authors:  R Heilig; C Lemaire; J L Mandel
Journal:  Nucleic Acids Res       Date:  1987-11-25       Impact factor: 16.971

2.  Vector-Alu PCR: a rapid step in mapping cosmids and YACs.

Authors:  C Breukel; J Wijnen; C Tops; H vd Klift; H Dauwerse; P M Khan
Journal:  Nucleic Acids Res       Date:  1990-05-25       Impact factor: 16.971

3.  Confirmation of linkage of Friedreich ataxia to chromosome 9 and identification of a new closely linked marker.

Authors:  R Fujita; Y Agid; P Trouillas; A Seck; C Tommasi-Davenas; A J Driesel; K Olek; K H Grzeschik; Y Nakamura; J L Mandel; A Hanauer
Journal:  Genomics       Date:  1989-01       Impact factor: 5.736

4.  Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors.

Authors:  D T Burke; G F Carle; M V Olson
Journal:  Science       Date:  1987-05-15       Impact factor: 47.728

5.  A model for the separation of large DNA molecules by crossed field gel electrophoresis.

Authors:  E M Southern; R Anand; W R Brown; D S Fletcher
Journal:  Nucleic Acids Res       Date:  1987-08-11       Impact factor: 16.971

6.  A human single-copy DNA probe (DR 47) detects a Taq I RFLP on chromosome 9 (D9S5).

Authors:  H D Orzechowski; J Hennig; P Winter; K H Grzeschik; K Olek; A J Driesel
Journal:  Nucleic Acids Res       Date:  1987-08-11       Impact factor: 16.971

7.  "A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity". Addendum.

Authors:  A P Feinberg; B Vogelstein
Journal:  Anal Biochem       Date:  1984-02       Impact factor: 3.365

8.  Chromosomal assignment of the genes for human aldehyde dehydrogenase-1 and aldehyde dehydrogenase-2.

Authors:  L C Hsu; A Yoshida; T Mohandas
Journal:  Am J Hum Genet       Date:  1986-05       Impact factor: 11.025

9.  The Friedreich ataxia gene is assigned to chromosome 9q13-q21 by mapping of tightly linked markers and shows linkage disequilibrium with D9S15.

Authors:  A Hanauer; M Chery; R Fujita; A J Driesel; S Gilgenkrantz; J L Mandel
Journal:  Am J Hum Genet       Date:  1990-01       Impact factor: 11.025

10.  Genetic homogeneity at the Friedreich ataxia locus on chromosome 9.

Authors:  S Chamberlain; J Shaw; J Wallis; A Rowland; L Chow; M Farrall; B Keats; A Richter; M Roy; S Melancon
Journal:  Am J Hum Genet       Date:  1989-04       Impact factor: 11.025

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  7 in total

Review 1.  Friedreich ataxia: molecular mechanisms, redox considerations, and therapeutic opportunities.

Authors:  Renata Santos; Sophie Lefevre; Dominika Sliwa; Alexandra Seguin; Jean-Michel Camadro; Emmanuel Lesuisse
Journal:  Antioxid Redox Signal       Date:  2010-09-01       Impact factor: 8.401

2.  Recombinations in individuals homozygous by descent localize the Friedreich ataxia locus in a cloned 450-kb interval.

Authors:  F Rodius; F Duclos; K Wrogemann; D Le Paslier; P Ougen; A Billault; S Belal; C Musenger; A Brice; A Dürr
Journal:  Am J Hum Genet       Date:  1994-06       Impact factor: 11.025

3.  A gene for distal arthrogryposis type I maps to the pericentromeric region of chromosome 9.

Authors:  M Bamshad; W S Watkins; R K Zenger; J F Bohnsack; J C Carey; B Otterud; P A Krakowiak; M Robertson; L B Jorde
Journal:  Am J Hum Genet       Date:  1994-12       Impact factor: 11.025

4.  Study of large inbred Friedreich ataxia families reveals a recombination between D9S15 and the disease locus.

Authors:  S Belal; K Panayides; G Sirugo; C Ben Hamida; P Ioannou; F Hentati; J Beckmann; M Koenig; J L Mandel; M Ben Hamida
Journal:  Am J Hum Genet       Date:  1992-12       Impact factor: 11.025

5.  Gene in the region of the Friedreich ataxia locus encodes a putative transmembrane protein expressed in the nervous system.

Authors:  F Duclos; U Boschert; G Sirugo; J L Mandel; R Hen; M Koenig
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-01       Impact factor: 11.205

6.  The Friedreich ataxia critical region spans a 150-kb interval on chromosome 9q13.

Authors:  L Montermini; F Rodius; L Pianese; M D Moltò; M Cossée; V Campuzano; F Cavalcanti; A Monticelli; F Palau; G Gyapay
Journal:  Am J Hum Genet       Date:  1995-11       Impact factor: 11.025

7.  Genetic recombination events which position the Friedreich ataxia locus proximal to the D9S15/D9S5 linkage group on chromosome 9q.

Authors:  S Chamberlain; M Farrall; J Shaw; D Wilkes; J Carvajal; R Hillerman; K Doudney; A E Harding; R Williamson; G Sirugo
Journal:  Am J Hum Genet       Date:  1993-01       Impact factor: 11.025

  7 in total

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