Literature DB >> 1328651

Structure of porin refined at 1.8 A resolution.

M S Weiss1, G E Schulz.   

Abstract

The crystal structure of porin from Rhodobacter capsulatus has been refined using the simulated annealing method. The final model consists of all 301 amino acid residues well obeying standard geometry, three calcium ions, 274 solvent molecules, three detergent molecules and one unknown ligand modeled as a detergent molecule. The final crystallographic R-factor is 18.6% based on 42,851 independent reflections in the resolution range 10 to 1.8 A. The model is described in detail.

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Year:  1992        PMID: 1328651     DOI: 10.1016/0022-2836(92)90903-w

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  76 in total

1.  Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor.

Authors:  I Jacoboni; P L Martelli; P Fariselli; V De Pinto; R Casadio
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

2.  Toward genomic identification of beta-barrel membrane proteins: composition and architecture of known structures.

Authors:  William C Wimley
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

3.  Modeling of the structural features of integral-membrane proteins reverse-environment prediction of integral membrane protein structure (REPIMPS).

Authors:  S Dastmalchi; M B Morris; W B Church
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

4.  Tilt, twist, and coiling in beta-barrel membrane proteins: relation to infrared dichroism.

Authors:  T Páli; D Marsh
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

Review 5.  Molecular basis of bacterial outer membrane permeability revisited.

Authors:  Hiroshi Nikaido
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

6.  Prediction of the plant beta-barrel proteome: a case study of the chloroplast outer envelope.

Authors:  Enrico Schleiff; Lutz Andreas Eichacker; Kerstin Eckart; Thomas Becker; Oliver Mirus; Tanja Stahl; Jürgen Soll
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

7.  BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria.

Authors:  Frode S Berven; Kristian Flikka; Harald B Jensen; Ingvar Eidhammer
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

8.  Improving structure-based function prediction using molecular dynamics.

Authors:  Dariya S Glazer; Randall J Radmer; Russ B Altman
Journal:  Structure       Date:  2009-07-15       Impact factor: 5.006

9.  Expression and refolding of Omp38 from Burkholderia pseudomallei and Burkholderia thailandensis, and its function as a diffusion porin.

Authors:  Jaruwan Siritapetawee; Heino Prinz; Chartchai Krittanai; Wipa Suginta
Journal:  Biochem J       Date:  2004-12-15       Impact factor: 3.857

10.  Adsorption of bacteriophage lambda on the LamB protein of Escherichia coli K-12: point mutations in gene J of lambda responsible for extended host range.

Authors:  C Werts; V Michel; M Hofnung; A Charbit
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

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