Literature DB >> 1316651

Proofreading, NTPases and translation: constraints on accurate biochemistry.

M Yarus1.   

Abstract

Two accurate individual reactions can work together as a more accurate overall mechanism. This is straightforward for a transient reaction, but the same accuracy in the steady state (termed proofreading) requires many preconditions. The preconditions for proofreading can be summarized as four statements, which allow experimental identification and subsequent confirmation of proofreading mechanisms.

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Year:  1992        PMID: 1316651     DOI: 10.1016/0968-0004(92)90320-9

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  9 in total

1.  Analysis of codon:anticodon interactions within the ribosome provides new insights into codon reading and the genetic code structure.

Authors:  V I Lim; J F Curran
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

Review 2.  Signaling cascades: escape from kinetic proofreading.

Authors:  D MacGlashan
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-19       Impact factor: 11.205

3.  Exon ligation is proofread by the DExD/H-box ATPase Prp22p.

Authors:  Rabiah M Mayas; Hiroshi Maita; Jonathan P Staley
Journal:  Nat Struct Mol Biol       Date:  2006-05-07       Impact factor: 15.369

4.  ATP Hydrolysis by the SNF2 Domain of Dnmt5 Is Coupled to Both Specific Recognition and Modification of Hemimethylated DNA.

Authors:  Phillip A Dumesic; Caitlin I Stoddard; Sandra Catania; Geeta J Narlikar; Hiten D Madhani
Journal:  Mol Cell       Date:  2020-05-20       Impact factor: 17.970

5.  The DEAH box ATPases Prp16 and Prp43 cooperate to proofread 5' splice site cleavage during pre-mRNA splicing.

Authors:  Prakash Koodathingal; Thaddeus Novak; Joseph A Piccirilli; Jonathan P Staley
Journal:  Mol Cell       Date:  2010-08-13       Impact factor: 17.970

6.  Rethinking Causation for Data-intensive Biology: Constraints, Cancellations, and Quantized Organisms: Causality in complex organisms is sculpted by constraints rather than instigators, with outcomes perhaps better described by quantized patterns than rectilinear pathways.

Authors:  Douglas E Brash
Journal:  Bioessays       Date:  2020-06-02       Impact factor: 4.345

Review 7.  Staying on message: ensuring fidelity in pre-mRNA splicing.

Authors:  Daniel R Semlow; Jonathan P Staley
Journal:  Trends Biochem Sci       Date:  2012-05-05       Impact factor: 13.807

Review 8.  Ribosome dynamics during decoding.

Authors:  Marina V Rodnina; Niels Fischer; Cristina Maracci; Holger Stark
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

Review 9.  Molecular Insights into Determinants of Translational Readthrough and Implications for Nonsense Suppression Approaches.

Authors:  Silvia Lombardi; Maria Francesca Testa; Mirko Pinotti; Alessio Branchini
Journal:  Int J Mol Sci       Date:  2020-12-11       Impact factor: 5.923

  9 in total

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