Literature DB >> 1314382

Initiator methionine tRNA is essential for Ty1 transposition in yeast.

K B Chapman1, A S Byström, J D Boeke.   

Abstract

The yeast retrotransposon Ty1 transposes through an RNA intermediate by a mechanism similar to that of retroviral reverse transcription and integration. Ty1 RNA contains a putative minus strand primer binding site (-PBS) that is complementary to the 3' acceptor stem of the initiator methionine tRNA (tRNA(iMet)). Here we demonstrate that the tRNA(iMet) is used as a primer for Ty1 reverse transcription. Mutations in the Ty1 element that alter 5 of 10 nucleotides that are complementary to the tRNA(iMet) abolish Ty1 transposition, even though they are silent with regard to Ty1 protein coding. We have constructed a yeast strain lacking wild-type tRNA(iMet) that is dependent on a mutant derivative of tRNA(iMet) that has an altered acceptor stem sequence, engineered to restore homology with the Ty1 -PBS mutant. The compensatory mutations made in the tRNA(iMet) alleviate the transposition defect of the Ty1 -PBS mutant. The mutant and wild-type tRNA(iMet) are enriched within Ty1 virus-like particles irrespective of complementarity to the Ty1 -PBS. Thus, complementarity between the Ty1 -PBS and tRNA(iMet) is essential for transposition but is not necessary for packaging of the tRNA inside virus-like particles.

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Year:  1992        PMID: 1314382      PMCID: PMC48841          DOI: 10.1073/pnas.89.8.3236

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast.

Authors:  R S Sikorski; J D Boeke
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

2.  A functional analysis of the repeated methionine initiator tRNA genes (IMT) in yeast.

Authors:  A S Byström; G R Fink
Journal:  Mol Gen Genet       Date:  1989-04

3.  High-frequency deletion between homologous sequences during retrotransposition of Ty elements in Saccharomyces cerevisiae.

Authors:  H Xu; J D Boeke
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

4.  The methionine initiator tRNA genes of yeast.

Authors:  A M Cigan; T F Donahue
Journal:  Gene       Date:  1986       Impact factor: 3.688

5.  A simple structural feature is a major determinant of the identity of a transfer RNA.

Authors:  Y M Hou; P Schimmel
Journal:  Nature       Date:  1988-05-12       Impact factor: 49.962

6.  Nucleotide sequences of the retroviral long terminal repeats and their adjacent regions.

Authors:  H R Chen; W C Barker
Journal:  Nucleic Acids Res       Date:  1984-02-24       Impact factor: 16.971

7.  Deletions in the tRNA(Lys) primer-binding site of human immunodeficiency virus type 1 identify essential regions for reverse transcription.

Authors:  H Rhim; J Park; C D Morrow
Journal:  J Virol       Date:  1991-09       Impact factor: 5.103

8.  The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: cell-free Ty1 transposition.

Authors:  D J Eichinger; J D Boeke
Journal:  Cell       Date:  1988-09-23       Impact factor: 41.582

9.  Involvement of reverse transcription in the replication of cauliflower mosaic virus: a detailed model and test of some aspects.

Authors:  P Pfeiffer; T Hohn
Journal:  Cell       Date:  1983-07       Impact factor: 41.582

10.  A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance.

Authors:  J D Boeke; F LaCroute; G R Fink
Journal:  Mol Gen Genet       Date:  1984
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  57 in total

1.  The yeast retrotransposon Ty5 uses the anticodon stem-loop of the initiator methionine tRNA as a primer for reverse transcription.

Authors:  N Ke; X Gao; J B Keeney; J D Boeke; D F Voytas
Journal:  RNA       Date:  1999-07       Impact factor: 4.942

2.  Assembly of a catalytic unit for RNA microhelix aminoacylation using nonspecific RNA binding domains.

Authors:  J W Chihade; P Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

3.  Evidence for the packaging of multiple copies of Tf1 mRNA into particles and the trans priming of reverse transcription.

Authors:  A L Haag; J H Lin; H L Levin
Journal:  J Virol       Date:  2000-08       Impact factor: 5.103

4.  A nucleocapsid functionality contained within the amino terminus of the Ty1 protease that is distinct and separable from proteolytic activity.

Authors:  Joseph F Lawler; Gennady V Merkulov; Jef D Boeke
Journal:  J Virol       Date:  2002-01       Impact factor: 5.103

5.  Novel transcript truncating function of Rap1p revealed by synthetic codon-optimized Ty1 retrotransposon.

Authors:  Robert M Yarrington; Sarah M Richardson; Cheng Ran Lisa Huang; Jef D Boeke
Journal:  Genetics       Date:  2011-11-30       Impact factor: 4.562

Review 6.  Function of a retrotransposon nucleocapsid protein.

Authors:  Suzanne B Sandmeyer; Kristina A Clemens
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

7.  Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon.

Authors:  Eric C Bolton; Candice Coombes; Yolanda Eby; Mattias Cardell; Jef D Boeke
Journal:  RNA       Date:  2005-01-20       Impact factor: 4.942

8.  Efficient homologous recombination of Ty1 element cDNA when integration is blocked.

Authors:  G Sharon; T J Burkett; D J Garfinkel
Journal:  Mol Cell Biol       Date:  1994-10       Impact factor: 4.272

9.  Multiple molecular determinants for retrotransposition in a primer tRNA.

Authors:  J B Keeney; K B Chapman; V Lauermann; D F Voytas; S U Aström; U von Pawel-Rammingen; A Byström; J D Boeke
Journal:  Mol Cell Biol       Date:  1995-01       Impact factor: 4.272

10.  A 5'-3' long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition.

Authors:  Gaël Cristofari; Carole Bampi; Marcelle Wilhelm; François-Xavier Wilhelm; Jean-Luc Darlix
Journal:  EMBO J       Date:  2002-08-15       Impact factor: 11.598

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