Literature DB >> 12971722

Transcription factories: quantitative studies of nanostructures in the mammalian nucleus.

Sonya Martin1, Ana Pombo.   

Abstract

Transcription by the three nuclear RNA polymerases is carried out in transcription factories. This conclusion has been drawn from estimates of the total number of nascent transcripts or active polymerase molecules and the number of transcription sites within a cell. Here we summarise the variety of methods used to determine these parameters, discuss their associated problems and outline future prospects.

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Year:  2003        PMID： 12971722     DOI： 10.1023/a:1024926710797

Source DB:  PubMed          Journal:  Chromosome Res        ISSN： 0967-3849            Impact factor:   4.620


  69 in total

Review 1.  A unified theory of gene expression.

Authors:  George Orphanides; Danny Reinberg
Journal:  Cell       Date:  2002-02-22       Impact factor: 41.582

2.  Large-scale chromatin fibers of living cells display a discontinuous functional organization.

Authors:  N Sadoni; K F Sullivan; P Weinzierl; E H Stelzer; D Zink
Journal:  Chromosoma       Date:  2001-04       Impact factor: 4.316

3.  Nanosizing of fluorescent objects by spatially modulated illumination microscopy.

Authors:  Antonio Virgillo Failla; Udo Spoeri; Benno Albrecht; Alexander Kroll; Christoph Cremer
Journal:  Appl Opt       Date:  2002-12-01       Impact factor: 1.980

Review 4.  Molecular biology. Chromatin higher order folding--wrapping up transcription.

Authors:  Peter J Horn; Craig L Peterson
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

5.  Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei.

Authors:  D A Jackson; F J Iborra; E M Manders; P R Cook
Journal:  Mol Biol Cell       Date:  1998-06       Impact factor: 4.138

Review 6.  Ultrastructure of the nucleus in relation to transcription and splicing: roles of perichromatin fibrils and interchromatin granules.

Authors:  E Puvion; F Puvion-Dutilleul
Journal:  Exp Cell Res       Date:  1996-12-15       Impact factor: 3.905

Review 7.  Human autoantibodies: probes for nucleolus structure and function.

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Journal:  Virchows Arch B Cell Pathol Incl Mol Pathol       Date:  1987

8.  In vitro splicing of pre-mRNA containing bromouridine.

Authors:  D G Wansink; R L Nelissen; L de Jong
Journal:  Mol Biol Rep       Date:  1994-03       Impact factor: 2.316

9.  Spatial organization of large-scale chromatin domains in the nucleus: a magnified view of single chromosome territories.

Authors:  J Ferreira; G Paolella; C Ramos; A I Lamond
Journal:  J Cell Biol       Date:  1997-12-29       Impact factor: 10.539

10.  Cytostellin: a novel, highly conserved protein that undergoes continuous redistribution during the cell cycle.

Authors:  S L Warren; A S Landolfi; C Curtis; J S Morrow
Journal:  J Cell Sci       Date:  1992-10       Impact factor: 5.285
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  21 in total

1.  Nascent RNA synthesis in the context of chromatin architecture.

Authors:  Nicolas Sadoni; Daniele Zink
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

Review 2.  Organization of transcription.

Authors:  Lyubomira Chakalova; Peter Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-07-28       Impact factor: 10.005

3.  Integrating one-dimensional and three-dimensional maps of genomes.

Authors:  Natalia Naumova; Job Dekker
Journal:  J Cell Sci       Date:  2010-06-15       Impact factor: 5.285

4.  Nanostructure of specific chromatin regions and nuclear complexes.

Authors:  H Mathée; D Baddeley; C Wotzlaw; J Fandrey; C Cremer; U Birk
Journal:  Histochem Cell Biol       Date:  2005-11-12       Impact factor: 4.304

Review 5.  Transcription factories: gene expression in unions?

Authors:  Heidi Sutherland; Wendy A Bickmore
Journal:  Nat Rev Genet       Date:  2009-07       Impact factor: 53.242

6.  Changes in chromosome organization during PHA-activation of resting human lymphocytes measured by cryo-FISH.

Authors:  Miguel R Branco; Tiago Branco; Francisco Ramirez; Ana Pombo
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

7.  The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes.

Authors:  Ekaterina S Gushchanskaya; Artem V Artemov; Sergey V Ulyanov; Maria D Logacheva; Aleksey A Penin; Elena S Kotova; Sergey B Akopov; Lev G Nikolaev; Olga V Iarovaia; Eugene D Sverdlov; Alexey A Gavrilov; Sergey V Razin
Journal:  Epigenetics       Date:  2014-04-15       Impact factor: 4.528

Review 8.  Transcription and recombination factories: common features?

Authors:  Joseph S Lucas; Claudia Bossen; Cornelis Murre
Journal:  Curr Opin Cell Biol       Date:  2010-12-17       Impact factor: 8.382

9.  The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

Authors:  Davide Baù; Amartya Sanyal; Bryan R Lajoie; Emidio Capriotti; Meg Byron; Jeanne B Lawrence; Job Dekker; Marc A Marti-Renom
Journal:  Nat Struct Mol Biol       Date:  2010-12-05       Impact factor: 15.369

Review 10.  Three-dimensional genome architecture: players and mechanisms.

Authors:  Ana Pombo; Niall Dillon
Journal:  Nat Rev Mol Cell Biol       Date:  2015-03-11       Impact factor: 94.444
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