Literature DB >> 12960151

Tight control of platelet-derived growth factor B/c-sis expression by interplay between the 5'-untranslated region sequence and the major upstream promoter.

Baoguang Han1, Zizheng Dong, Jian-Ting Zhang.   

Abstract

The long and GC-rich 5'-untranslated region (5'-UTR) of the known 3.8-kb platelet-derived growth factor B (PDGF-B)/c-sis mRNA is highly conserved and inhibits its own translation. It has been thought that this 5'-UTR functions by regulating translation possibly using an internal ribosome entry site (IRES)-mediated mechanism. However, in the present study we found no evidence that the 5'-UTR sequence of PDGF-B mRNA contains any IRES activity. Instead, we found that the 5'-UTR sequence of PDGF-B functions as a promoter both constitutively and upon induction in a variety of cell lines. The 5'-UTR sequence contains two promoters (termed P1 and P2) when only the 5'-UTR sequence is analyzed. In the presence of the upstream TATA-box-containing promoter (P0), P1 and P0 promoters are integrated into one promoter, whereas the P2 promoter still functions. The full promoter with combined P0, P1, and P2 produced two transcripts, with the major one having the full-length 5'-UTR and the minor one the short 5'-UTR. The integrated P0/P1 promoter and P2 promoter are likely responsible for producing the endogenous 3.8- and 2.8-kb PDGF-B mRNAs that are detected in cultured human renal microvascular endothelial cells, a few tumor cells, and rat brain tissues. Furthermore, we detected the 2.8-kb PDGF-B mRNA in erythroleukemia K562 cells upon 12-O-tetradecanoylphorbol-13-acetate-induced differentiation. Considering that the 5'-UTR in the 3.8-kb mRNA contains no IRES activity and inhibits cap-dependent translation, we believe that the endogenous 2.8-kb mRNA produced from the 5'-UTR promoter is likely the major template responsible for protein production both constitutively and upon induction. We also found that the transcription from the 5'-UTR P2 promoter might be coordinated by the major upstream P0 promoter upon stimulation. Based on these observations, we propose that the TATA-containing P0 promoter and the 5'-UTR promoter work together to tightly control the expression of PDGF-B.

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Year:  2003        PMID: 12960151     DOI: 10.1074/jbc.M304976200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  12 in total

1.  Alphavirus replicon approach to promoterless analysis of IRES elements.

Authors:  K I Kamrud; M Custer; J M Dudek; G Owens; K D Alterson; J S Lee; J L Groebner; J F Smith
Journal:  Virology       Date:  2006-12-06       Impact factor: 3.616

Review 2.  Searching for IRES.

Authors:  Stephen D Baird; Marcel Turcotte; Robert G Korneluk; Martin Holcik
Journal:  RNA       Date:  2006-09-06       Impact factor: 4.942

Review 3.  Bridging IRES elements in mRNAs to the eukaryotic translation apparatus.

Authors:  Kerry D Fitzgerald; Bert L Semler
Journal:  Biochim Biophys Acta       Date:  2009-07-23

4.  Translational regulation of RPA2 via internal ribosomal entry site and by eIF3a.

Authors:  Ji-Ye Yin; Zi-Zheng Dong; Ran-Yi Liu; Juan Chen; Zhao-Qian Liu; Jian-Ting Zhang
Journal:  Carcinogenesis       Date:  2013-02-07       Impact factor: 4.944

5.  Internal ribosome entry site structural motifs conserved among mammalian fibroblast growth factor 1 alternatively spliced mRNAs.

Authors:  Yvan Martineau; Christine Le Bec; Laurent Monbrun; Valérie Allo; Ing-Ming Chiu; Olivier Danos; Hervé Moine; Hervé Prats; Anne-Catherine Prats
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

6.  Splicing variants of the porcine betaine-homocysteine S-methyltransferase gene: implications for mammalian metabolism.

Authors:  Radhika Ganu; Timothy Garrow; Markos Koutmos; Laurie Rund; Lawrence B Schook
Journal:  Gene       Date:  2013-08-13       Impact factor: 3.688

7.  Cryptic transcripts from a ubiquitous plasmid origin of replication confound tests for cis-regulatory function.

Authors:  Nathan A Lemp; Kei Hiraoka; Noriyuki Kasahara; Christopher R Logg
Journal:  Nucleic Acids Res       Date:  2012-05-22       Impact factor: 16.971

8.  Regulation of expression by promoters versus internal ribosome entry site in the 5'-untranslated sequence of the human cyclin-dependent kinase inhibitor p27kip1.

Authors:  Zhaoqian Liu; Zizheng Dong; Baoguang Han; Youyun Yang; Yang Liu; Jian-Ting Zhang
Journal:  Nucleic Acids Res       Date:  2005-07-08       Impact factor: 16.971

Review 9.  A second look at cellular mRNA sequences said to function as internal ribosome entry sites.

Authors:  Marilyn Kozak
Journal:  Nucleic Acids Res       Date:  2005-11-28       Impact factor: 16.971

10.  A cryptic promoter in potato virus X vector interrupted plasmid construction.

Authors:  Yuyuan Guo; Thomas L German; Ronald D Schultz
Journal:  BMC Mol Biol       Date:  2007-03-05       Impact factor: 2.946

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