Literature DB >> 12958238

Comparison of serologic and genetic porB-based typing of Neisseria gonorrhoeae: consequences for future characterization.

Magnus Unemo1, Per Olcén, Jan Albert, Hans Fredlund.   

Abstract

Due to temporal changes in the epidemiology of gonorrhea, a precise characterization of Neisseria gonorrhoeae is essential. In the present study genetic heterogeneity in the porB genes of N. gonorrhoeae was examined, and serovar determination was compared to porB gene sequencing. Among 108 N. gonorrhoeae isolates, phylogenetic analysis of the entire porB alleles (924 to 993 bp) identified 87 unique sequences. By analyzing only the four to six most heterogeneous porB gene regions (174 to 363 bp), 86 out of these 87 genetic variants were identified. Consequently, analysis of shorter highly variable regions of the porB gene generates high-level discriminatory ability as well as fast, objective, reproducible, and portable data for epidemiological characterization of N. gonorrhoeae. Regarding putative antigenic epitopes of PorB for Genetic Systems monoclonal antibodies (MAbs), some of the previous findings were confirmed, but new findings were also observed. For several of the MAbs, however, the precise amino acid residues of PorB critical for single-MAb reactivity were difficult to identify. In addition, repeated serovar determination of 108 N. gonorrhoeae isolates revealed discrepancies for 34 isolates, mostly due to nonreproducible reactivity with single MAbs. Thus, the prospects of a genetic typing system with congruent translation of the serovar determination seem to be limited. In conclusion, analysis of short highly variable regions of the porB gene could form the basis for a fast molecular epidemiological tool for the examination of emergence and transmission of N. gonorrhoeae strains within the community.

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Year:  2003        PMID: 12958238      PMCID: PMC193813          DOI: 10.1128/JCM.41.9.4141-4147.2003

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  35 in total

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Journal:  Mol Biol Evol       Date:  2000-03       Impact factor: 16.240

Review 2.  Global prevalence and incidence estimates of selected curable STDs.

Authors:  A C Gerbase; J T Rowley; D H Heymann; S F Berkley; P Piot
Journal:  Sex Transm Infect       Date:  1998-06       Impact factor: 3.519

3.  MEGA2: molecular evolutionary genetics analysis software.

Authors:  S Kumar; K Tamura; I B Jakobsen; M Nei
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

4.  A typing system for neisseria gonorrhoeae based on biotinylated oligonucleotide probes to PIB gene variable regions.

Authors:  D K Thompson; C D Deal; C A Ison; J M Zenilman; M C Bash
Journal:  J Infect Dis       Date:  2000-05-15       Impact factor: 5.226

5.  Comparison of sequencing of the por gene and typing of the opa gene for discrimination of Neisseria gonorrhoeae strains from sexual contacts.

Authors:  R P Viscidi; J C Demma; J Gu; J Zenilman
Journal:  J Clin Microbiol       Date:  2000-12       Impact factor: 5.948

6.  Amplified fragment length polymorphism fingerprinting for identification of a core group of Neisseria gonorrhoeae transmitters in the population attending a clinic for treatment of sexually transmitted diseases in Amsterdam, The Netherlands.

Authors:  J Spaargaren; J Stoof; H Fennema; R Coutinho; P Savelkoul
Journal:  J Clin Microbiol       Date:  2001-06       Impact factor: 5.948

7.  Use of the neisserial lipoprotein (Lip) for subtyping Neisseria gonorrhoeae.

Authors:  D L Trees; A J Schultz; J S Knapp
Journal:  J Clin Microbiol       Date:  2000-08       Impact factor: 5.948

8.  Genetic diversity and mosaicism at the por locus of Neisseria gonorrhoeae.

Authors:  T C Fudyk; I W Maclean; J N Simonsen; E N Njagi; J Kimani; R C Brunham; F A Plummer
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

9.  Evaluation of the discriminatory power of typing methods for Neisseria gonorrhoeae.

Authors:  M Van Looveren; C A Ison; M Ieven; P Vandamme; I M Martin; K Vermeulen; A Renton; H Goossens
Journal:  J Clin Microbiol       Date:  1999-07       Impact factor: 5.948

10.  Structural and evolutionary inference from molecular variation in Neisseria porins.

Authors:  J P Derrick; R Urwin; J Suker; I M Feavers; M C Maiden
Journal:  Infect Immun       Date:  1999-05       Impact factor: 3.441

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  19 in total

1.  Evaluation of Neisseria gonorrhoeae multiple-locus variable-number tandem-repeat analysis, N. gonorrhoeae Multiantigen sequence typing, and full-length porB gene sequence analysis for molecular epidemiological typing.

Authors:  Raymond Heymans; Daniel Golparian; Sylvia M Bruisten; Leo M Schouls; Magnus Unemo
Journal:  J Clin Microbiol       Date:  2011-11-09       Impact factor: 5.948

2.  Gonorrhea Update.

Authors:  Margaret C. Bash
Journal:  Curr Infect Dis Rep       Date:  2004-04       Impact factor: 3.725

3.  por Variable-region typing by DNA probe hybridization is broadly applicable to epidemiologic studies of Neisseria gonorrhoeae.

Authors:  Margaret C Bash; Peixuan Zhu; Sunita Gulati; Durrie McKnew; Peter A Rice; Freyja Lynn
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

4.  Phenotypic and genotypic analyses of Neisseria gonorrhoeae isolates that express frequently recovered PorB PIA variable region types suggest that certain P1a porin sequences confer a selective advantage for urogenital tract infection.

Authors:  Lotisha E Garvin; Margaret C Bash; Christine Keys; Douglas M Warner; Sanjay Ram; William M Shafer; Ann E Jerse
Journal:  Infect Immun       Date:  2008-06-09       Impact factor: 3.441

Review 5.  Review and international recommendation of methods for typing neisseria gonorrhoeae isolates and their implications for improved knowledge of gonococcal epidemiology, treatment, and biology.

Authors:  Magnus Unemo; Jo-Anne R Dillon
Journal:  Clin Microbiol Rev       Date:  2011-07       Impact factor: 26.132

6.  Molecular typing of Neisseria gonorrhoeae isolates by pyrosequencing of highly polymorphic segments of the porB gene.

Authors:  Magnus Unemo; Per Olcén; Jon Jonasson; Hans Fredlund
Journal:  J Clin Microbiol       Date:  2004-07       Impact factor: 5.948

7.  Antibiotic susceptibility and characteristics of Neisseria meningitidis isolates from the African meningitis belt, 2000 to 2006: phenotypic and genotypic perspectives.

Authors:  Sara Thulin Hedberg; Hans Fredlund; Pierre Nicolas; Dominique A Caugant; Per Olcén; Magnus Unemo
Journal:  Antimicrob Agents Chemother       Date:  2009-02-02       Impact factor: 5.191

8.  Comparison of Neisseria gonorrhoeae multiantigen sequence typing and porB sequence analysis for identification of clusters of N. gonorrhoeae isolates.

Authors:  Mingmin Liao; Sarah Helgeson; Wei-Ming Gu; Yang Yang; Ann M Jolly; Jo-Anne R Dillon
Journal:  J Clin Microbiol       Date:  2008-12-03       Impact factor: 5.948

9.  Predominant porB1A and porB1B genotypes and correlation of gene mutations with drug resistance in Neisseria gonorrhoeae isolates in Eastern China.

Authors:  Aihua Sun; Xingli Fan; Ye Gu; Peng Du; Renxian Tang; Yafei Mao; Xuai Lin; Jie Yan
Journal:  BMC Infect Dis       Date:  2010-11-10       Impact factor: 3.090

10.  Molecular Typing of Neisseria gonorrhoeae Isolates by Opa-Typing and Ribotyping in New Delhi, India.

Authors:  Pejvak Khaki; Preena Bhalla; Ahmad Mir Fayaz; Sohiela Moradi Bidhendi; Majid Esmailzadeh; Pawan Sharma
Journal:  Int J Microbiol       Date:  2009-09-16
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