Literature DB >> 12957188

An international external quality assessment of nucleic acid amplification of herpes simplex virus.

Lottie Schloss1, Anton M van Loon, Paola Cinque, Graham Cleator, José-Manuel Echevarria, Kerstin I Falk, Paul Klapper, Jurjen Schirm, Bent Faber Vestergaard, Hubert Niesters, Therese Popow-Kraupp, Wim Quint, Annika Linde.   

Abstract

BACKGROUND: There is an increasing awareness of the need for external quality control of diagnostic virology.
OBJECTIVES: To assess the quality of nucleic acid amplification tests (NAT) of herpes simplex within Europe. STUDY
DESIGN: Herpes simplex virus (HSV) proficiency panels were produced at the Swedish Institute for Infectious Disease Control on behalf of the European Union Concerted Action for Quality Control of Nucleic Acid Amplification in 1999 and 2000. Nine reference laboratories evaluated the production process. Each panel consisted of 12 coded samples with various concentrations of inactivated, freeze-dried HSV type 1 (HSV-1), and HSV type 2 (HSV-2), or negative controls. Positive samples included HSV-1 and HSV-2 in a range of concentrations (2 x 10(2) to 2 x 10(7) genome copies per ml) similar to those found in cerebrospinal fluids from patients with HSV encephalitis.
RESULTS: Sixty-six participants reported a total of 76 data sets for panel 1, and 71 reported 78 data sets for panel 2. The majority of the participants employed qualitative 'in-house' polymerase chain reaction (PCR) methods, either in a single, nested or semi-nested format. For panel 2, 9 laboratories reported use of 'real-time' PCR in contrast to 3 for panel 1. Three laboratories submitted quantitative results on both panels. Thirty percent of the data sets had correct results for the entire panel 1. In 6 data sets (8%) a total of 11 false positive results were reported. For panel 2, 28% of the data sets had correct result. Nineteen false positive results were reported in 14 data sets (18%), but most of the incorrect results reflected a lack of test sensitivity.
CONCLUSIONS: The relatively high frequency of false positive results and the large number of false-negative results, albeit at low copy number, stress the need for improvement in the quality of HSV NAT and for external quality control programmes.

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Year:  2003        PMID: 12957188     DOI: 10.1016/s1386-6532(03)00003-9

Source DB:  PubMed          Journal:  J Clin Virol        ISSN: 1386-6532            Impact factor:   3.168


  14 in total

1.  Development and Validation of a Laboratory-Developed Multiplex Real-Time PCR Assay on the BD Max System for Detection of Herpes Simplex Virus and Varicella-Zoster Virus DNA in Various Clinical Specimens.

Authors:  Sylvie Pillet; Paul O Verhoeven; Amélie Epercieux; Thomas Bourlet; Bruno Pozzetto
Journal:  J Clin Microbiol       Date:  2015-04-15       Impact factor: 5.948

2.  Reduced PCR sensitivity due to impaired DNA recovery with the MagNA Pure LC total nucleic acid isolation kit.

Authors:  Tim Schuurman; Alex van Breda; Richard de Boer; Mirjam Kooistra-Smid; Marcel Beld; Paul Savelkoul; René Boom
Journal:  J Clin Microbiol       Date:  2005-09       Impact factor: 5.948

3.  Results of the first World Health Organization international collaborative study of detection of human papillomavirus DNA.

Authors:  Wim G V Quint; Sonia R Pagliusi; Nico Lelie; Ethel-Michele de Villiers; Cosette M Wheeler
Journal:  J Clin Microbiol       Date:  2006-02       Impact factor: 5.948

4.  Global proficiency study of human papillomavirus genotyping.

Authors:  Carina Eklund; Tiequn Zhou; Joakim Dillner
Journal:  J Clin Microbiol       Date:  2010-09-15       Impact factor: 5.948

5.  Factors influencing PCR detection of viruses in cerebrospinal fluid of patients with suspected CNS infections.

Authors:  N W S Davies; L J Brown; J Gonde; D Irish; R O Robinson; A V Swan; J Banatvala; R S Howard; M K Sharief; P Muir
Journal:  J Neurol Neurosurg Psychiatry       Date:  2005-01       Impact factor: 10.154

6.  Incidence and pathogenesis of clinical relapse after herpes simplex encephalitis in adults.

Authors:  B Sköldenberg; E Aurelius; A Hjalmarsson; F Sabri; M Forsgren; B Andersson; A Linde; O Strannegård; M Studahl; L Hagberg; L Rosengren
Journal:  J Neurol       Date:  2005-10-17       Impact factor: 4.849

7.  False negative PCR despite high levels of JC virus DNA in spinal fluid: Implications for diagnostic testing.

Authors:  Marie L Landry; Tore Eid; Serguei Bannykh; Eugene Major
Journal:  J Clin Virol       Date:  2008-08-12       Impact factor: 3.168

Review 8.  Infection-associated encephalopathies: their investigation, diagnosis, and treatment.

Authors:  N W S Davies; M K Sharief; R S Howard
Journal:  J Neurol       Date:  2006-05-24       Impact factor: 6.682

9.  Amp-PCR: combining a random unbiased Phi29-amplification with a specific real-time PCR, performed in one tube to increase PCR sensitivity.

Authors:  Lena Erlandsson; Lars Peter Nielsen; Anders Fomsgaard
Journal:  PLoS One       Date:  2010-12-31       Impact factor: 3.240

10.  External quality assessment of cytomegalovirus DNA detection on dried blood spots.

Authors:  Maria Barbi; William G MacKay; Sandro Binda; Anton M van Loon
Journal:  BMC Microbiol       Date:  2008-01-08       Impact factor: 3.605

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