Literature DB >> 12925891

Insights from human/mouse genome comparisons.

Len A Pennacchio1.   

Abstract

Large-scale public genomic sequencing efforts have provided a wealth of vertebrate sequence data poised to provide insights into mammalian biology. These include deep genomic sequence coverage of human, mouse, rat, zebrafish, and two pufferfish ( Fugu rubripes and Tetraodon nigroviridis) (Aparicio et al. 2002; Lander et al. 2001; Venter et al. 2001; Waterston et al. 2002). In addition, a high-priority has been placed on determining the genomic sequence of chimpanzee, dog, cow, frog, and chicken (Boguski 2002). While only recently available, whole genome sequence data have provided the unique opportunity to globally compare complete genome contents. Furthermore, the shared evolutionary ancestry of vertebrate species has allowed the development of comparative genomic approaches to identify ancient conserved sequences with functionality. Accordingly, this review focuses on the initial comparison of available mammalian genomes and describes various insights derived from such analysis.

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Mesh:

Year:  2003        PMID: 12925891     DOI: 10.1007/s00335-002-4001-1

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  57 in total

Review 1.  Fugu: a compact vertebrate reference genome.

Authors:  B Venkatesh; P Gilligan; S Brenner
Journal:  FEBS Lett       Date:  2000-06-30       Impact factor: 4.124

2.  Fast algorithms for large-scale genome alignment and comparison.

Authors:  Arthur L Delcher; Adam Phillippy; Jane Carlton; Steven L Salzberg
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

3.  Recent segmental duplications in the human genome.

Authors:  Jeffrey A Bailey; Zhiping Gu; Royden A Clark; Knut Reinert; Rhea V Samonte; Stuart Schwartz; Mark D Adams; Eugene W Myers; Peter W Li; Evan E Eichler
Journal:  Science       Date:  2002-08-09       Impact factor: 47.728

Review 4.  Small is beautiful: comparative genomics with the pufferfish (Fugu rubripes).

Authors:  G Elgar; R Sandford; S Aparicio; A Macrae; B Venkatesh; S Brenner
Journal:  Trends Genet       Date:  1996-04       Impact factor: 11.639

Review 5.  Searching for regulatory elements in human noncoding sequences.

Authors:  L Duret; P Bucher
Journal:  Curr Opin Struct Biol       Date:  1997-06       Impact factor: 6.809

6.  A bacterial artificial chromosome library for sequencing the complete human genome.

Authors:  K Osoegawa; A G Mammoser; C Wu; E Frengen; C Zeng; J J Catanese; P J de Jong
Journal:  Genome Res       Date:  2001-03       Impact factor: 9.043

7.  Association found between the promoter region polymorphism in the apolipoprotein A-V gene and the serum triglyceride level in Japanese schoolchildren.

Authors:  Kazue Endo; Hisako Yanagi; Jungo Araki; Chiaki Hirano; Kimiko Yamakawa-Kobayashi; Shigeo Tomura
Journal:  Hum Genet       Date:  2002-09-11       Impact factor: 4.132

8.  The mouse beta-globin locus control region: hypersensitive sites 3 and 4.

Authors:  G Jiménez; K B Gale; T Enver
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

9.  Human-mouse alignments with BLASTZ.

Authors:  Scott Schwartz; W James Kent; Arian Smit; Zheng Zhang; Robert Baertsch; Ross C Hardison; David Haussler; Webb Miller
Journal:  Genome Res       Date:  2003-01       Impact factor: 9.043

10.  Identification of an evolutionarily conserved 110 base-pair cis-acting regulatory sequence that governs Wnt-1 expression in the murine neural plate.

Authors:  D H Rowitch; Y Echelard; P S Danielian; K Gellner; S Brenner; A P McMahon
Journal:  Development       Date:  1998-07       Impact factor: 6.868

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  25 in total

1.  Conference report--genomics: the promise of SNPs and bats highlights of the ABRF 2004--integrating technologies in proteomics and genomics; February 28-March 2, 2004; Portland, Oregon.

Authors:  Sara M Mariani
Journal:  MedGenMed       Date:  2004-04-19

2.  Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human.

Authors:  Pavan Umate; Renu Tuteja; Narendra Tuteja
Journal:  Plant Mol Biol       Date:  2010-04-10       Impact factor: 4.076

3.  The evolution of epitype.

Authors:  Richard B Meagher
Journal:  Plant Cell       Date:  2010-06-15       Impact factor: 11.277

4.  Serial segmental duplications during primate evolution result in complex human genome architecture.

Authors:  Pawełl Stankiewicz; Christine J Shaw; Marjorie Withers; Ken Inoue; James R Lupski
Journal:  Genome Res       Date:  2004-11       Impact factor: 9.043

Review 5.  Enhancer identification through comparative genomics.

Authors:  Axel Visel; James Bristow; Len A Pennacchio
Journal:  Semin Cell Dev Biol       Date:  2007-01-05       Impact factor: 7.727

Review 6.  Current concepts of follicle-stimulating hormone receptor gene regulation.

Authors:  Jitu W George; Elizabeth A Dille; Leslie L Heckert
Journal:  Biol Reprod       Date:  2010-08-25       Impact factor: 4.285

Review 7.  Host resistance to malaria: using mouse models to explore the host response.

Authors:  Rhea Longley; Clare Smith; Anny Fortin; Joanne Berghout; Brendan McMorran; Gaétan Burgio; Simon Foote; Philippe Gros
Journal:  Mamm Genome       Date:  2010-11-30       Impact factor: 2.957

8.  Mutations of TMC1 cause deafness by disrupting mechanoelectrical transduction.

Authors:  Hiroshi Nakanishi; Kiyoto Kurima; Yoshiyuki Kawashima; Andrew J Griffith
Journal:  Auris Nasus Larynx       Date:  2014-06-02       Impact factor: 1.863

9.  Comparative gene mapping in cattle, Indian muntjac, and Chinese muntjac by fluorescence in situ hybridization.

Authors:  Andrea E Murmann; Antoaneta Mincheva; Markus O Scheuermann; Mathieu Gautier; Fentang Yang; Johannes Buitkamp; Pamela L Strissel; Reiner Strick; Janet D Rowley; Peter Lichter
Journal:  Genetica       Date:  2008-02-19       Impact factor: 1.082

10.  Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons.

Authors:  Rui Liu; Sridhar Hannenhalli; Maja Bucan
Journal:  Genome Biol       Date:  2009-07-01       Impact factor: 13.583

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