Literature DB >> 12925687

The potential for gene repair via triple helix formation.

Michael M Seidman1, Peter M Glazer.   

Abstract

Triplex-forming oligonucleotides (TFOs) can bind to polypurine/polypyrimidine regions in DNA in a sequence-specific manner. The specificity of this binding raises the possibility of using triplex formation for directed genome modification, with the ultimate goal of repairing genetic defects in human cells. Several studies have demonstrated that treatment of mammalian cells with TFOs can provoke DNA repair and recombination, in a manner that can be exploited to introduce desired sequence changes. This review will summarize recent advances in this field while also highlighting major obstacles that remain to be overcome before the application of triplex technology to therapeutic gene repair can be achieved.

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Year:  2003        PMID: 12925687      PMCID: PMC171401          DOI: 10.1172/JCI19552

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  83 in total

1.  pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes.

Authors:  N Sugimoto; P Wu; H Hara; Y Kawamoto
Journal:  Biochemistry       Date:  2001-08-07       Impact factor: 3.162

2.  Oligo(2'-O-methyl)ribonucleotides. Effective probes for duplex DNA.

Authors:  M Shimizu; A Konishi; Y Shimada; H Inoue; E Ohtsuka
Journal:  FEBS Lett       Date:  1992-05-11       Impact factor: 4.124

3.  Abundance and degree of dispersion of genomic d(GA)n.d(TC)n sequences.

Authors:  H Manor; B S Rao; R G Martin
Journal:  J Mol Evol       Date:  1988       Impact factor: 2.395

4.  Targeted correction of an episomal gene in mammalian cells by a short DNA fragment tethered to a triplex-forming oligonucleotide.

Authors:  P P Chan; M Lin; A F Faruqi; J Powell; M M Seidman; P M Glazer
Journal:  J Biol Chem       Date:  1999-04-23       Impact factor: 5.157

5.  Mutagenesis in mammalian cells induced by triple helix formation and transcription-coupled repair.

Authors:  G Wang; M M Seidman; P M Glazer
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

6.  5-(1-propargylamino)-2'-deoxyuridine (UP): a novel thymidine analogue for generating DNA triplexes with increased stability.

Authors:  J Bijapur; M D Keppler; S Bergqvist; T Brown; K R Fox
Journal:  Nucleic Acids Res       Date:  1999-04-15       Impact factor: 16.971

7.  Accessibility of nuclear DNA to triplex-forming oligonucleotides: the integrated HIV-1 provirus as a target.

Authors:  C Giovannangeli; S Diviacco; V Labrousse; S Gryaznov; P Charneau; C Helene
Journal:  Proc Natl Acad Sci U S A       Date:  1997-01-07       Impact factor: 11.205

8.  Homologous recombination involving small single-stranded oligonucleotides in human cells.

Authors:  C R Campbell; W Keown; L Lowe; D Kirschling; R Kucherlapati
Journal:  New Biol       Date:  1989-11

9.  Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA.

Authors:  G P Schroth; P S Ho
Journal:  Nucleic Acids Res       Date:  1995-06-11       Impact factor: 16.971

10.  An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes.

Authors:  M J Behe
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

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  36 in total

Review 1.  Targeted genetic repair: an emerging approach to genetic therapy.

Authors:  Bruce A Sullenger
Journal:  J Clin Invest       Date:  2003-08       Impact factor: 14.808

2.  Psoralen interstrand cross-link repair is specifically altered by an adjacent triple-stranded structure.

Authors:  F Guillonneau; A L Guieysse; S Nocentini; C Giovannangeli; D Praseuth
Journal:  Nucleic Acids Res       Date:  2004-02-13       Impact factor: 16.971

3.  Divalent counterion-induced condensation of triple-strand DNA.

Authors:  Xiangyun Qiu; V Adrian Parsegian; Donald C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

Review 4.  New approaches toward recognition of nucleic acid triple helices.

Authors:  Dev P Arya
Journal:  Acc Chem Res       Date:  2010-11-12       Impact factor: 22.384

5.  Solution structure of a dsDNA:LNA triplex.

Authors:  Jesper J Sørensen; Jakob T Nielsen; Michael Petersen
Journal:  Nucleic Acids Res       Date:  2004-11-18       Impact factor: 16.971

Review 6.  Gene modulation for treating liver fibrosis.

Authors:  Kun Cheng; Ram I Mahato
Journal:  Crit Rev Ther Drug Carrier Syst       Date:  2007       Impact factor: 4.889

7.  Naturally extended CT . AG repeats increase H-DNA structures and promoter activity in the smooth muscle myosin light chain kinase gene.

Authors:  Yoo-Jeong Han; Primal de Lanerolle
Journal:  Mol Cell Biol       Date:  2007-11-08       Impact factor: 4.272

8.  Enhanced cellular uptake of a triplex-forming oligonucleotide by nanoparticle formation in the presence of polypropylenimine dendrimers.

Authors:  Latha M Santhakumaran; Thresia Thomas; T J Thomas
Journal:  Nucleic Acids Res       Date:  2004-04-15       Impact factor: 16.971

9.  Preparation and application of triple helix forming oligonucleotides and single strand oligonucleotide donors for gene correction.

Authors:  Rowshon Alam; Arun Kalliat Thazhathveetil; Hong Li; Michael M Seidman
Journal:  Methods Mol Biol       Date:  2014

Review 10.  Bioconjugation of oligonucleotides for treating liver fibrosis.

Authors:  Zhaoyang Ye; Houssam S Hajj Houssein; Ram I Mahato
Journal:  Oligonucleotides       Date:  2007
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