Literature DB >> 12921536

The unique features of glycolytic pathways in Archaea.

Corné H Verhees1, Servé W M Kengen, Judith E Tuininga, Gerrit J Schut, Michael W W Adams, Willem M De Vos, John Van Der Oost.   

Abstract

An early divergence in evolution has resulted in two prokaryotic domains, the Bacteria and the Archaea. Whereas the central metabolic routes of bacteria and eukaryotes are generally well-conserved, variant pathways have developed in Archaea involving several novel enzymes with a distinct control. A spectacular example of convergent evolution concerns the glucose-degrading pathways of saccharolytic archaea. The identification, characterization and comparison of the glycolytic enzymes of a variety of phylogenetic lineages have revealed a mosaic of canonical and novel enzymes in the archaeal variants of the Embden-Meyerhof and the Entner-Doudoroff pathways. By means of integrating results from biochemical and genetic studies with recently obtained comparative and functional genomics data, the structure and function of the archaeal glycolytic routes, the participating enzymes and their regulation are re-evaluated.

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Year:  2003        PMID: 12921536      PMCID: PMC1223704          DOI: 10.1042/BJ20021472

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  117 in total

1.  Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

Authors:  K S Makarova; L Aravind; M Y Galperin; N V Grishin; R L Tatusov; Y I Wolf; E V Koonin
Journal:  Genome Res       Date:  1999-07       Impact factor: 9.043

2.  Demonstration of a novel glycolytic pathway in the hyperthermophilic archaeon Thermococcus zilligii by (13)C-labeling experiments and nuclear magnetic resonance analysis.

Authors:  K B Xavier; M S da Costa; H Santos
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

3.  The ferredoxin-dependent conversion of glyceraldehyde-3-phosphate in the hyperthermophilic archaeon Pyrococcus furiosus represents a novel site of glycolytic regulation.

Authors:  J van der Oost; G Schut; S W Kengen; W R Hagen; M Thomm; W M de Vos
Journal:  J Biol Chem       Date:  1998-10-23       Impact factor: 5.157

4.  DNA microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus: evidence for anNew type of sulfur-reducing enzyme complex.

Authors:  G J Schut; J Zhou; M W Adams
Journal:  J Bacteriol       Date:  2001-12       Impact factor: 3.490

5.  Carbohydrate metabolism in Thermoproteus tenax: in vivo utilization of the non-phosphorylative Entner-Doudoroff pathway and characterization of its first enzyme, glucose dehydrogenase.

Authors:  B Siebers; V F Wendisch; R Hensel
Journal:  Arch Microbiol       Date:  1997-08       Impact factor: 2.552

6.  The phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus is a unique glycolytic enzyme that belongs to the cupin superfamily.

Authors:  C H Verhees; M A Huynen; D E Ward; E Schiltz; W M de Vos; J van der Oost
Journal:  J Biol Chem       Date:  2001-08-30       Impact factor: 5.157

7.  Relationship between glycosyl hydrolase inventory and growth physiology of the hyperthermophile Pyrococcus furiosus on carbohydrate-based media.

Authors:  L E Driskill; K Kusy; M W Bauer; R M Kelly
Journal:  Appl Environ Microbiol       Date:  1999-03       Impact factor: 4.792

8.  Evidence for the operation of a novel Embden-Meyerhof pathway that involves ADP-dependent kinases during sugar fermentation by Pyrococcus furiosus.

Authors:  S W Kengen; F A de Bok; N D van Loo; C Dijkema; A J Stams; W M de Vos
Journal:  J Biol Chem       Date:  1994-07-01       Impact factor: 5.157

9.  Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides.

Authors:  Gerrit J Schut; Scott D Brehm; Susmita Datta; Michael W W Adams
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

10.  Crystal structure of Pyrococcus furiosus phosphoglucose isomerase. Implications for substrate binding and catalysis.

Authors:  John M Berrisford; Jasper Akerboom; Andrew P Turnbull; Daniel de Geus; Svetlana E Sedelnikova; Ian Staton; Cameron W McLeod; Corne H Verhees; John van der Oost; David W Rice; Patrick J Baker
Journal:  J Biol Chem       Date:  2003-06-09       Impact factor: 5.157

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  75 in total

1.  Cupin-type phosphoglucose isomerases (Cupin-PGIs) constitute a novel metal-dependent PGI family representing a convergent line of PGI evolution.

Authors:  Thomas Hansen; Bettina Schlichting; Martina Felgendreher; Peter Schönheit
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

Review 2.  On the origin of biochemistry at an alkaline hydrothermal vent.

Authors:  William Martin; Michael J Russell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

3.  A unique highly thermostable 2-phosphoglycerate forming glycerate kinase from the hyperthermophilic archaeon Pyrococcus horikoshii: gene cloning, expression and characterization.

Authors:  Bo Liu; Ye Hong; Lei Wu; Zhuo Li; Jinfeng Ni; Duohong Sheng; Yulong Shen
Journal:  Extremophiles       Date:  2007-06-12       Impact factor: 2.395

4.  A critical view of metabolic network adaptations.

Authors:  Balázs Papp; Bas Teusink; Richard A Notebaart
Journal:  HFSP J       Date:  2008-12-03

5.  On the Early Evolution of Catabolic Pathways: A Comparative Genomics Approach. I. The Cases of Glucose, Ribose, and the Nucleobases Catabolic Routes.

Authors:  Mario Rivas; Arturo Becerra; Antonio Lazcano
Journal:  J Mol Evol       Date:  2017-11-30       Impact factor: 2.395

6.  De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Authors:  Priya Narasingarao; Sheila Podell; Juan A Ugalde; Céline Brochier-Armanet; Joanne B Emerson; Jochen J Brocks; Karla B Heidelberg; Jillian F Banfield; Eric E Allen
Journal:  ISME J       Date:  2011-06-30       Impact factor: 10.302

7.  Genetic examination of initial amino acid oxidation and glutamate catabolism in the hyperthermophilic archaeon Thermococcus kodakarensis.

Authors:  Yuusuke Yokooji; Takaaki Sato; Shinsuke Fujiwara; Tadayuki Imanaka; Haruyuki Atomi
Journal:  J Bacteriol       Date:  2013-02-22       Impact factor: 3.490

8.  Evolutionary relatedness between glycolytic enzymes most frequently occurring in genomes.

Authors:  A Oslancová; S Janecek
Journal:  Folia Microbiol (Praha)       Date:  2004       Impact factor: 2.099

9.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.

Authors:  Jong-Hyun Jung; Ju-Hoon Lee; James F Holden; Dong-Ho Seo; Hakdong Shin; Hae-Yeong Kim; Wooki Kim; Sangryeol Ryu; Cheon-Seok Park
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

10.  Enzymatic characterization of AMP phosphorylase and ribose-1,5-bisphosphate isomerase functioning in an archaeal AMP metabolic pathway.

Authors:  Riku Aono; Takaaki Sato; Ayumu Yano; Shosuke Yoshida; Yuichi Nishitani; Kunio Miki; Tadayuki Imanaka; Haruyuki Atomi
Journal:  J Bacteriol       Date:  2012-10-12       Impact factor: 3.490

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