Literature DB >> 12917490

Ingestion of bacterially expressed double-stranded RNA inhibits gene expression in planarians.

Phillip A Newmark1, Peter W Reddien, Francesc Cebrià, Alejandro Sánchez Alvarado.   

Abstract

Freshwater planarian flatworms are capable of regenerating complete organisms from tiny fragments of their bodies; the basis for this regenerative prowess is an experimentally accessible stem cell population that is present in the adult planarian. The study of these organisms, classic experimental models for investigating metazoan regeneration, has been revitalized by the application of modern molecular biological approaches. The identification of thousands of unique planarian ESTs, coupled with large-scale whole-mount in situ hybridization screens, and the ability to inhibit planarian gene expression through double-stranded RNA-mediated genetic interference, provide a wealth of tools for studying the molecular mechanisms that regulate tissue regeneration and stem cell biology in these organisms. Here we show that, as in Caenorhabditis elegans, ingestion of bacterially expressed double-stranded RNA can inhibit gene expression in planarians. This inhibition persists throughout the process of regeneration, allowing phenotypes with disrupted regenerative patterning to be identified. These results pave the way for large-scale screens for genes involved in regenerative processes.

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Year:  2003        PMID: 12917490      PMCID: PMC304099          DOI: 10.1073/pnas.1834205100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

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Journal:  Semin Cell Dev Biol       Date:  1999-08       Impact factor: 7.727

Review 2.  Not your father's planarian: a classic model enters the era of functional genomics.

Authors:  Philip A Newmark; Alejandro Sánchez Alvarado
Journal:  Nat Rev Genet       Date:  2002-03       Impact factor: 53.242

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Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

4.  The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration.

Authors:  Alejandro Sánchez Alvarado; Phillip A Newmark; Sofia M Robb; Réjeanne Juste
Journal:  Development       Date:  2002-12       Impact factor: 6.868

5.  A planarian orthopedia homolog is specifically expressed in the branch region of both the mature and regenerating brain.

Authors:  Y Umesono; K Watanabe; K Agata
Journal:  Dev Growth Differ       Date:  1997-12       Impact factor: 2.053

6.  frazzled encodes a Drosophila member of the DCC immunoglobulin subfamily and is required for CNS and motor axon guidance.

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Review 8.  Moving around in a worm: netrin UNC-6 and circumferential axon guidance in C. elegans.

Authors:  William G Wadsworth
Journal:  Trends Neurosci       Date:  2002-08       Impact factor: 13.837

9.  One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution.

Authors:  C T Chung; S L Niemela; R H Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

10.  Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes.

Authors:  Kaveh Ashrafi; Francesca Y Chang; Jennifer L Watts; Andrew G Fraser; Ravi S Kamath; Julie Ahringer; Gary Ruvkun
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

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  101 in total

Review 1.  Indeterminate Growth: Could It Represent the Ancestral Condition?

Authors:  Iswar K Hariharan; David B Wake; Marvalee H Wake
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-07-27       Impact factor: 10.005

2.  Dynein assembly factor with WD repeat domains 1 (DAW1) is required for the function of motile cilia in the planarian Schmidtea mediterranea.

Authors:  Sydney Lynn Lesko; Labib Rouhana
Journal:  Dev Growth Differ       Date:  2020-06-01       Impact factor: 2.053

3.  The newt in us.

Authors:  Andrea Rinaldi
Journal:  EMBO Rep       Date:  2005-02       Impact factor: 8.807

4.  Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planaria.

Authors:  Peter W Reddien; Adam L Bermange; Kenneth J Murfitt; Joya R Jennings; Alejandro Sánchez Alvarado
Journal:  Dev Cell       Date:  2005-05       Impact factor: 12.270

5.  Preparation of the planarian Schmidtea mediterranea for high-resolution histology and transmission electron microscopy.

Authors:  John L Brubacher; Ana P Vieira; Phillip A Newmark
Journal:  Nat Protoc       Date:  2014-02-20       Impact factor: 13.491

6.  Zebrafish Ciliopathy Screen Plus Human Mutational Analysis Identifies C21orf59 and CCDC65 Defects as Causing Primary Ciliary Dyskinesia.

Authors:  Christina Austin-Tse; Jan Halbritter; Maimoona A Zariwala; Renée M Gilberti; Heon Yung Gee; Nathan Hellman; Narendra Pathak; Yan Liu; Jennifer R Panizzi; Ramila S Patel-King; Douglas Tritschler; Raqual Bower; Eileen O'Toole; Jonathan D Porath; Toby W Hurd; Moumita Chaki; Katrina A Diaz; Stefan Kohl; Svjetlana Lovric; Daw-Yang Hwang; Daniela A Braun; Markus Schueler; Rannar Airik; Edgar A Otto; Margaret W Leigh; Peadar G Noone; Johnny L Carson; Stephanie D Davis; Jessica E Pittman; Thomas W Ferkol; Jeffry J Atkinson; Kenneth N Olivier; Scott D Sagel; Sharon D Dell; Margaret Rosenfeld; Carlos E Milla; Niki T Loges; Heymut Omran; Mary E Porter; Stephen M King; Michael R Knowles; Iain A Drummond; Friedhelm Hildebrandt
Journal:  Am J Hum Genet       Date:  2013-10-03       Impact factor: 11.025

7.  Egf Signaling Directs Neoblast Repopulation by Regulating Asymmetric Cell Division in Planarians.

Authors:  Kai Lei; Hanh Thi-Kim Vu; Ryan D Mohan; Sean A McKinney; Chris W Seidel; Richard Alexander; Kirsten Gotting; Jerry L Workman; Alejandro Sánchez Alvarado
Journal:  Dev Cell       Date:  2016-08-11       Impact factor: 12.270

8.  The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.

Authors:  Dasaradhi Palakodeti; Magda Smielewska; Yi-Chien Lu; Gene W Yeo; Brenton R Graveley
Journal:  RNA       Date:  2008-05-02       Impact factor: 4.942

Review 9.  Ca²⁺ channels and praziquantel: a view from the free world.

Authors:  John D Chan; Magdalena Zarowiecki; Jonathan S Marchant
Journal:  Parasitol Int       Date:  2012-12-16       Impact factor: 2.230

10.  Oral administration of bacterially expressed VP28dsRNA to protect Penaeus monodon from white spot syndrome virus.

Authors:  M Sarathi; Martin C Simon; C Venkatesan; A S Sahul Hameed
Journal:  Mar Biotechnol (NY)       Date:  2008-01-17       Impact factor: 3.619

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