Literature DB >> 12911303

Structural changes of water molecules during the photoactivation processes in bovine rhodopsin.

Yuji Furutani1, Yoshinori Shichida, Hideki Kandori.   

Abstract

Internal water molecules of rhodopsins play an important role in stabilizing the crucial ion pair comprised by the protonated retinal Schiff base and its counterion. Previous low-temperature FTIR spectroscopy of archaeal rhodopsins observed water O-D stretching vibrations at 2400-2100 cm(-1) in D(2)O, corresponding to strong hydrogen bonds. Since a water molecule bridges the protonated Schiff base and an aspartate in archaeal rhodopsins, the observed water molecules presumably hydrate the negative charges in the Schiff base region. In contrast, the FTIR spectroscopy data of bovine rhodopsin presented here revealed that there are no spectral changes of water molecules under strongly hydrogen-bonding conditions (in the range <2400 cm(-1) for O-D stretch) during the photoactivation processes. The only observed water bands were located in the >2500 cm(-1) region that corresponds to weak hydrogen bonding. These results imply that the ion pair state in vertebrate visual rhodopsins is stabilized in a manner different from that in archaeal rhodopsins. In addition, the internal water molecules that hydrate the negative charges do not play important role in the photoactivation processes of rhodopsin that involve proton transfer from the Schiff base to Glu113 upon formation of Meta II. Structural changes of the H-D exchangeable peptide amide of a beta-sheet are observed upon formation of metarhodopsin II, suggesting that motion of a beta-sheet is coupled to the proton transfer reaction from the Schiff base to its counterion.

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Year:  2003        PMID: 12911303     DOI: 10.1021/bi034592k

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  QM/MM study of energy storage and molecular rearrangements due to the primary event in vision.

Authors:  Jose A Gascon; Victor S Batista
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

2.  Photoreactions and structural changes of anabaena sensory rhodopsin.

Authors:  Akira Kawanabe; Hideki Kandori
Journal:  Sensors (Basel)       Date:  2009-12-03       Impact factor: 3.576

3.  The color of rhodopsins at the ab initio multiconfigurational perturbation theory resolution.

Authors:  Pedro B Coto; Angela Strambi; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-07       Impact factor: 11.205

Review 4.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

5.  Steric constraint in the primary photoproduct of sensory rhodopsin II is a prerequisite for light-signal transfer to HtrII.

Authors:  Motohiro Ito; Yuki Sudo; Yuji Furutani; Takashi Okitsu; Akimori Wada; Michio Homma; John L Spudich; Hideki Kandori
Journal:  Biochemistry       Date:  2008-05-15       Impact factor: 3.162

6.  Specificity of the chromophore-binding site in human cone opsins.

Authors:  Kota Katayama; Sahil Gulati; Joseph T Ortega; Nathan S Alexander; Wenyu Sun; Marina M Shenouda; Krzysztof Palczewski; Beata Jastrzebska
Journal:  J Biol Chem       Date:  2019-02-15       Impact factor: 5.157

Review 7.  Involvement of rhodopsin and ATP in the activation of membranous guanylate cyclase in retinal photoreceptor outer segments (ROS-GC) by GC-activating proteins (GCAPs): a new model for ROS-GC activation and its link to retinal diseases.

Authors:  Vladimir A Bondarenko; Fumio Hayashi; Jiro Usukura; Akio Yamazaki
Journal:  Mol Cell Biochem       Date:  2009-11-26       Impact factor: 3.396

8.  Conserved waters mediate structural and functional activation of family A (rhodopsin-like) G protein-coupled receptors.

Authors:  Thomas E Angel; Mark R Chance; Krzysztof Palczewski
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-11       Impact factor: 11.205

Review 9.  FTIR study of primate color visual pigments.

Authors:  Kota Katayama; Hideki Kandori
Journal:  Biophysics (Nagoya-shi)       Date:  2015-03-04

10.  Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation.

Authors:  Shivani Ahuja; Viktor Hornak; Elsa C Y Yan; Natalie Syrett; Joseph A Goncalves; Amiram Hirshfeld; Martine Ziliox; Thomas P Sakmar; Mordechai Sheves; Philip J Reeves; Steven O Smith; Markus Eilers
Journal:  Nat Struct Mol Biol       Date:  2009-02-01       Impact factor: 15.369

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