Literature DB >> 12907670

The structure of 4-hydroxybenzoyl-CoA thioesterase from arthrobacter sp. strain SU.

James B Thoden1, Zhihao Zhuang, Debra Dunaway-Mariano, Hazel M Holden.   

Abstract

The 4-chlorobenzoyl-CoA dehalogenation pathway in certain Arthrobacter and Pseudomonas bacterial species contains three enzymes: a ligase, a dehalogenase, and a thioesterase. Here we describe the high resolution x-ray crystallographic structure of the 4-hydroxybenzoyl-CoA thioesterase from Arthrobacter sp. strain SU. The tetrameric enzyme is a dimer of dimers with each subunit adopting the so-called "hot dog fold" composed of six strands of anti-parallel beta-sheet flanked on one side by a rather long alpha-helix. The dimers come together to form the tetramer with their alpha-helices facing outwards. This quaternary structure is in sharp contrast to that previously observed for the 4-hydroxybenzoyl-CoA thioesterase from Pseudomonas species strain CBS-3, whereby the dimers forming the tetramer pack with their alpha-helices projecting toward the interfacial region. In the Arthrobacter thioesterase, each of the four active sites is formed by three of the subunits of the tetramer. On the basis of both structural and kinetic data, it appears that Glu73 is the active site base in the Arthrobacter thioesterase. Remarkably, this residue is located on the opposite side of the substrate-binding pocket compared with that observed for the Pseudomonas enzyme. Although these two bacterial thioesterases demonstrate equivalent catalytic efficiencies, substrate specificities, and metabolic functions, their quaternary structures, CoA-binding sites, and catalytic platforms are decidedly different.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12907670     DOI: 10.1074/jbc.M308198200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  30 in total

1.  AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes.

Authors:  Sigrun Reumann; Changle Ma; Steffen Lemke; Lavanya Babujee
Journal:  Plant Physiol       Date:  2004-08-27       Impact factor: 8.340

Review 2.  Thioesterases: a new perspective based on their primary and tertiary structures.

Authors:  David C Cantu; Yingfei Chen; Peter J Reilly
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

3.  Rv0216, a conserved hypothetical protein from Mycobacterium tuberculosis that is essential for bacterial survival during infection, has a double hotdog fold.

Authors:  Alina Castell; Patrik Johansson; Torsten Unge; T Alwyn Jones; Kristina Bäckbro
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

4.  Human brown fat inducible thioesterase variant 2 cellular localization and catalytic function.

Authors:  Danqi Chen; John Latham; Hong Zhao; Marco Bisoffi; Jeremiah Farelli; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2012-08-23       Impact factor: 3.162

5.  Structure, activity, and substrate selectivity of the Orf6 thioesterase from Photobacterium profundum.

Authors:  María Rodríguez-Guilbe; Delise Oyola-Robles; Eric R Schreiter; Abel Baerga-Ortiz
Journal:  J Biol Chem       Date:  2013-02-21       Impact factor: 5.157

6.  The catalytic mechanism of the hotdog-fold enzyme superfamily 4-hydroxybenzoyl-CoA thioesterase from Arthrobacter sp. strain SU.

Authors:  Feng Song; James B Thoden; Zhihao Zhuang; John Latham; Michael Trujillo; Hazel M Holden; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2012-08-20       Impact factor: 3.162

7.  The mechanisms of human hotdog-fold thioesterase 2 (hTHEM2) substrate recognition and catalysis illuminated by a structure and function based analysis.

Authors:  Jian Cao; Hang Xu; Hong Zhao; Weimin Gong; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2009-02-17       Impact factor: 3.162

8.  Structural basis for the activity and substrate specificity of fluoroacetyl-CoA thioesterase FlK.

Authors:  Marcio V B Dias; Fanglu Huang; Dimitri Y Chirgadze; Manuela Tosin; Dieter Spiteller; Emily F V Dry; Peter F Leadlay; Jonathan B Spencer; Tom L Blundell
Journal:  J Biol Chem       Date:  2010-04-29       Impact factor: 5.157

9.  Structure and catalytic mechanism of the thioesterase CalE7 in enediyne biosynthesis.

Authors:  Masayo Kotaka; Rong Kong; Insaf Qureshi; Qin Shi Ho; Huihua Sun; Chong Wai Liew; Lan Pei Goh; Peter Cheung; Yuguang Mu; Julien Lescar; Zhao-Xun Liang
Journal:  J Biol Chem       Date:  2009-04-08       Impact factor: 5.157

10.  Analysis of proteins with the 'hot dog' fold: prediction of function and identification of catalytic residues of hypothetical proteins.

Authors:  Lakshmi S Pidugu; Koustav Maity; Karthikeyan Ramaswamy; Namita Surolia; Kaza Suguna
Journal:  BMC Struct Biol       Date:  2009-05-28
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.