Literature DB >> 12877387

Applications of triple-stranded nucleic acid structures to DNA purification, detection and analysis.

Vladimir N Potaman1.   

Abstract

Regions of double-stranded (duplex) DNA with purine bases predominantly in one strand and pyrimidine bases in the other may bind oligonucleotides of an appropriate sequence to form triple-stranded (triplex) structures. Oligonucleotide analogs and mimics, such as peptide nucleic acid, may also form stable complexes with duplex DNA. Triplex formation enables the specific targeting of duplex domains. The principles of triplex structures and recent developments in the gene therapeutic and biotechnological applications are briefly reviewed. Adaptations of triplex methodology to molecular diagnostics (DNA purification, detection and analysis) are reviewed in greater detail.

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Year:  2003        PMID: 12877387     DOI: 10.1586/14737159.3.4.481

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  12 in total

1.  Site-resolved stabilization of a DNA triple helix by magnesium ions.

Authors:  Daniel Coman; Irina M Russu
Journal:  Nucleic Acids Res       Date:  2004-02-09       Impact factor: 16.971

2.  Chromosomal detection of simple sequence repeats (SSRs) using nondenaturing FISH (ND-FISH).

Authors:  Ángeles Cuadrado; Nicolás Jouve
Journal:  Chromosoma       Date:  2010-10       Impact factor: 4.316

3.  Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization.

Authors:  Irina Smolina; Charles Lee; Maxim Frank-Kamenetskii
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

Review 4.  Gene modulation for treating liver fibrosis.

Authors:  Kun Cheng; Ram I Mahato
Journal:  Crit Rev Ther Drug Carrier Syst       Date:  2007       Impact factor: 4.889

5.  Sequence specificity at targeting double-stranded DNA with a γ-PNA oligomer modified with guanidinium G-clamp nucleobases.

Authors:  Heiko Kuhn; Bichismita Sahu; Srinivas Rapireddy; Danith H Ly; Maxim D Frank-Kamenetskii
Journal:  Artif DNA PNA XNA       Date:  2010-07

6.  Developing a programmed restriction endonuclease for highly specific DNA cleavage.

Authors:  Kristin Eisenschmidt; Thomas Lanio; András Simoncsits; Albert Jeltsch; Vera Pingoud; Wolfgang Wende; Alfred Pingoud
Journal:  Nucleic Acids Res       Date:  2005-12-14       Impact factor: 16.971

7.  In vitro selection of oligonucleotides that bind double-stranded DNA in the presence of triplex-stabilizing agents.

Authors:  Elodie Ayel; Christophe Escudé
Journal:  Nucleic Acids Res       Date:  2009-12-08       Impact factor: 16.971

8.  Triplex-forming properties and enzymatic incorporation of a base-modified nucleotide capable of duplex DNA recognition at neutral pH.

Authors:  David A Rusling
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

9.  Synapsable quadruplex-mediated fibers.

Authors:  Miguel Angel Mendez; Veronika A Szalai
Journal:  Nanoscale Res Lett       Date:  2013-05-03       Impact factor: 4.703

10.  DNA triplex formation with 5-dimethylaminopropargyl deoxyuridine.

Authors:  David A Rusling; Guomei Peng; Natarajan Srinivasan; Keith R Fox; Tom Brown
Journal:  Nucleic Acids Res       Date:  2009-01-12       Impact factor: 16.971

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