Literature DB >> 12875831

Chromatin fibers, one-at-a-time.

Jordanka Zlatanova1, Sanford H Leuba.   

Abstract

Eukaryotic DNA is presented to the enzymatic machineries that use DNA as a template in the form of chromatin fibers. At the first level of organization, DNA is wrapped around histone octamers to form nucleosomal particles that are connected with stretches of linker DNA; this beads-on-a-string structure folds further to reach a very compact state in the nucleus. Chromatin structure is in constant flux, changing dynamically to accommodate the needs of the cell to replicate, transcribe, and repair the DNA, and to regulate all these processes in time and space. The more conventional biochemical and biophysical techniques used to study chromatin structure and dynamics have been recently complemented by an array of single-molecule approaches, in which chromatin fibers are investigated one-at-a-time. Here we describe single-molecule efforts to see nucleosomes, touch them, put them together, and then take them apart, one-at-a-time. The beginning is exciting and promising, but much more effort will be needed to take advantage of the huge potential that the new physics-based techniques offer.

Mesh:

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Year:  2003        PMID: 12875831     DOI: 10.1016/s0022-2836(03)00691-0

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  24 in total

1.  Electrostatic mechanism of nucleosomal array folding revealed by computer simulation.

Authors:  Jian Sun; Qing Zhang; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-26       Impact factor: 11.205

Review 2.  Organization of interphase chromatin.

Authors:  Rachel A Horowitz-Scherer; Christopher L Woodcock
Journal:  Chromosoma       Date:  2005-12-17       Impact factor: 4.316

Review 3.  The end adjusts the means: heterochromatin remodelling during terminal cell differentiation.

Authors:  Sergei A Grigoryev; Yaroslava A Bulynko; Evgenya Y Popova
Journal:  Chromosome Res       Date:  2006       Impact factor: 5.239

Review 4.  Chromatin physics: Replacing multiple, representation-centered descriptions at discrete scales by a continuous, function-dependent self-scaled model.

Authors:  C Lavelle; A Benecke
Journal:  Eur Phys J E Soft Matter       Date:  2006-02-22       Impact factor: 1.890

5.  Highly compact folding of chromatin induced by cellular cation concentrations. Evidence from atomic force microscopy studies in aqueous solution.

Authors:  Silvia Caño; Juan Manuel Caravaca; Marc Martín; Joan-Ramon Daban
Journal:  Eur Biophys J       Date:  2006-03-30       Impact factor: 1.733

6.  Homebuilt single-molecule scanning confocal fluorescence microscope studies of single DNA/protein interactions.

Authors:  Haocheng Zheng; Lori S Goldner; Sanford H Leuba
Journal:  Methods       Date:  2007-03       Impact factor: 3.608

Review 7.  Single-molecule biophysics: at the interface of biology, physics and chemistry.

Authors:  Ashok A Deniz; Samrat Mukhopadhyay; Edward A Lemke
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

8.  DNA sequence mediates nucleosome structure and stability.

Authors:  Shantanu Sharma; Nikolay V Dokholyan
Journal:  Biophys J       Date:  2007-10-12       Impact factor: 4.033

9.  Measuring the elasticity of clathrin-coated vesicles via atomic force microscopy.

Authors:  Albert J Jin; Kondury Prasad; Paul D Smith; Eileen M Lafer; Ralph Nossal
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

10.  Chromatin condensation in terminally differentiating mouse erythroblasts does not involve special architectural proteins but depends on histone deacetylation.

Authors:  Evgenya Y Popova; Sharon Wald Krauss; Sarah A Short; Gloria Lee; Jonathan Villalobos; Joan Etzell; Mark J Koury; Paul A Ney; Joel Anne Chasis; Sergei A Grigoryev
Journal:  Chromosome Res       Date:  2009-01-27       Impact factor: 5.239

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