Literature DB >> 12874060

GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana.

Yong Li1, Mario G Rosso, Nicolai Strizhov, Prisca Viehoever, Bernd Weisshaar.   

Abstract

SUMMARY: GABI-Kat SimpleSearch is a database of flanking sequence tags (FSTs) of T-DNA mutagenized Arabidopsis thaliana lines that were generated by the GABI-Kat project. Sequences flanking the T-DNA insertion sites were aligned to the A.thaliana genome sequence, annotated with information about the FST, the insertion site and the line from which the FST was derived. A web interface permits text-based as well as sequence-based searches for relevant insertions. GABI-Kat SimpleSearch aims to help biologists to quickly find T-DNA insertion mutants for their research. AVAILABILITY: http://www.mpiz-koeln.mpg.de/GABI-Kat/

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Year:  2003        PMID: 12874060     DOI: 10.1093/bioinformatics/btg170

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  27 in total

1.  An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics.

Authors:  Mario G Rosso; Yong Li; Nicolai Strizhov; Bernd Reiss; Koen Dekker; Bernd Weisshaar
Journal:  Plant Mol Biol       Date:  2003-09       Impact factor: 4.076

2.  FLAGdb++: a database for the functional analysis of the Arabidopsis genome.

Authors:  Franck Samson; Véronique Brunaud; Sylvain Duchêne; Yannick De Oliveira; Michel Caboche; Alain Lecharny; Sébastien Aubourg
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana.

Authors:  Noëllie Journot-Catalino; Imre E Somssich; Dominique Roby; Thomas Kroj
Journal:  Plant Cell       Date:  2006-11-17       Impact factor: 11.277

4.  Site preferences of insertional mutagenesis agents in Arabidopsis.

Authors:  Xiaokang Pan; Yong Li; Lincoln Stein
Journal:  Plant Physiol       Date:  2004-12-23       Impact factor: 8.340

5.  Arabidopsis WEE1 kinase controls cell cycle arrest in response to activation of the DNA integrity checkpoint.

Authors:  Kristof De Schutter; Jérôme Joubès; Toon Cools; Aurine Verkest; Florence Corellou; Elena Babiychuk; Els Van Der Schueren; Tom Beeckman; Sergeï Kushnir; Dirk Inzé; Lieven De Veylder
Journal:  Plant Cell       Date:  2007-01-05       Impact factor: 11.277

6.  The Arabidopsis plastidic glucose 6-phosphate/phosphate translocator GPT1 is essential for pollen maturation and embryo sac development.

Authors:  Patrycja Niewiadomski; Silke Knappe; Stefan Geimer; Karsten Fischer; Burkhard Schulz; Ulrike S Unte; Mario G Rosso; Peter Ache; Ulf-Ingo Flügge; Anja Schneider
Journal:  Plant Cell       Date:  2005-02-18       Impact factor: 11.277

7.  Arabidopsis thaliana RNase H2 deficiency counteracts the needs for the WEE1 checkpoint kinase but triggers genome instability.

Authors:  Pooneh Kalhorzadeh; Zhubing Hu; Toon Cools; Simon Amiard; Eva-Maria Willing; Nancy De Winne; Kris Gevaert; Geert De Jaeger; Korbinian Schneeberger; Charles I White; Lieven De Veylder
Journal:  Plant Cell       Date:  2014-09-12       Impact factor: 11.277

8.  INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana.

Authors:  José María Barrero; Rebeca González-Bayón; Juan Carlos del Pozo; María Rosa Ponce; José Luis Micol
Journal:  Plant Cell       Date:  2007-09-14       Impact factor: 11.277

9.  Arabidopsis reversibly glycosylated polypeptides 1 and 2 are essential for pollen development.

Authors:  Georgia Drakakaki; Olga Zabotina; Ivan Delgado; Stéphanie Robert; Kenneth Keegstra; Natasha Raikhel
Journal:  Plant Physiol       Date:  2006-10-27       Impact factor: 8.340

10.  Vacuolar sorting receptor for seed storage proteins in Arabidopsis thaliana.

Authors:  Tomoo Shimada; Kentaro Fuji; Kentaro Tamura; Maki Kondo; Mikio Nishimura; Ikuko Hara-Nishimura
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-04       Impact factor: 11.205

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