Literature DB >> 12871366

Logistics and quality control for DNA sampling in large multicenter studies.

R J Nederhand1, S Droog, C Kluft, M L Simoons, M P M de Maat.   

Abstract

To study associations between genetic variation and disease, large bio-banks need to be created in multicenter studies. Therefore, we studied the effects of storage time and temperature on DNA quality and quantity in a simulation experiment with storage up to 28 days frozen, at 4 degrees C and at room temperature. In the simulation experiment, the conditions did not influence the amount or quality of DNA to an unsatisfactory level. However, the amount of extracted DNA was decreased in frozen samples and in samples that were stored for > 7 days at room temperature. In a sample of patients from 24 countries of the EUROPA trial obtained by mail with transport times up to 1 month DNA yield and quality were adequate. From these results we conclude that transport of non-frozen blood by ordinary mail is usable and practical for DNA isolation for polymerase chain reaction in clinical and epidemiological studies.

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Year:  2003        PMID: 12871366     DOI: 10.1046/j.1538-7836.2003.00216.x

Source DB:  PubMed          Journal:  J Thromb Haemost        ISSN: 1538-7836            Impact factor:   5.824


  13 in total

Review 1.  The procurement, storage, and quality assurance of frozen blood and tissue biospecimens in pathology, biorepository, and biobank settings.

Authors:  Maryam Shabihkhani; Gregory M Lucey; Bowen Wei; Sergey Mareninov; Jerry J Lou; Harry V Vinters; Elyse J Singer; Timothy F Cloughesy; William H Yong
Journal:  Clin Biochem       Date:  2014-01-12       Impact factor: 3.281

2.  Buffy coat specimens remain viable as a DNA source for highly multiplexed genome-wide genetic tests after long term storage.

Authors:  Josyf C Mychaleckyj; Emily A Farber; Jessica Chmielewski; Jamie Artale; Laney S Light; Donald W Bowden; Xuanlin Hou; Santica M Marcovina
Journal:  J Transl Med       Date:  2011-06-10       Impact factor: 5.531

3.  Sources of pre-analytical variations in yield of DNA extracted from blood samples: analysis of 50,000 DNA samples in EPIC.

Authors:  Elodie Caboux; Christophe Lallemand; Gilles Ferro; Bertrand Hémon; Maimuna Mendy; Carine Biessy; Matt Sims; Nick Wareham; Abigail Britten; Anne Boland; Amy Hutchinson; Afshan Siddiq; Paolo Vineis; Elio Riboli; Isabelle Romieu; Sabina Rinaldi; Marc J Gunter; Petra H M Peeters; Yvonne T van der Schouw; Ruth Travis; H Bas Bueno-de-Mesquita; Federico Canzian; Maria-José Sánchez; Guri Skeie; Karina Standahl Olsen; Eiliv Lund; Roberto Bilbao; Núria Sala; Aurelio Barricarte; Domenico Palli; Carmen Navarro; Salvatore Panico; Maria Luisa Redondo; Silvia Polidoro; Laure Dossus; Marie Christine Boutron-Ruault; Françoise Clavel-Chapelon; Antonia Trichopoulou; Dimitrios Trichopoulos; Pagona Lagiou; Heiner Boeing; Eva Fisher; Rosario Tumino; Claudia Agnoli; Pierre Hainaut
Journal:  PLoS One       Date:  2012-07-13       Impact factor: 3.240

4.  Gene mutations responsible for primary immunodeficiency disorders: A report from the first primary immunodeficiency biobank in Iran.

Authors:  Saba Sheikhbahaei; Roya Sherkat; Dirk Roos; Majid Yaran; Somayeh Najafi; Alireza Emami
Journal:  Allergy Asthma Clin Immunol       Date:  2016-12-02       Impact factor: 3.406

5.  Evaluation of fluorimetry and direct visualization to interpret results of a loop-mediated isothermal amplification kit to detect Leishmania DNA.

Authors:  Ana V Ibarra-Meneses; Israel Cruz; Carmen Chicharro; Carmen Sánchez; Sylvain Biéler; Tobias Broger; Javier Moreno; Eugenia Carrillo
Journal:  Parasit Vectors       Date:  2018-04-17       Impact factor: 3.876

Review 6.  Biobanking in health care: evolution and future directions.

Authors:  Luigi Coppola; Alessandra Cianflone; Anna Maria Grimaldi; Mariarosaria Incoronato; Paolo Bevilacqua; Francesco Messina; Simona Baselice; Andrea Soricelli; Peppino Mirabelli; Marco Salvatore
Journal:  J Transl Med       Date:  2019-05-22       Impact factor: 5.531

7.  Reduction of systematic bias in transcriptome data from human peripheral blood mononuclear cells for transportation and biobanking.

Authors:  Hideki Ohmomo; Tsuyoshi Hachiya; Yu Shiwa; Ryohei Furukawa; Kanako Ono; Shigeki Ito; Yoji Ishida; Mamoru Satoh; Jiro Hitomi; Kenji Sobue; Atsushi Shimizu
Journal:  PLoS One       Date:  2014-08-07       Impact factor: 3.240

8.  High DNA stability in white blood cells and buffy coat lysates stored at ambient temperature under anoxic and anhydrous atmosphere.

Authors:  Anne-Lise Fabre; Aurélie Luis; Marthe Colotte; Sophie Tuffet; Jacques Bonnet
Journal:  PLoS One       Date:  2017-11-30       Impact factor: 3.240

9.  gDNA extraction yield and methylation status of blood samples are affected by long-term storage conditions.

Authors:  Charlotte Schröder; Werner Steimer
Journal:  PLoS One       Date:  2018-02-07       Impact factor: 3.240

10.  Ensuring the Safety and Security of Frozen Lung Cancer Tissue Collections through the Encapsulation of Dried DNA.

Authors:  Kevin Washetine; Mehdi Kara-Borni; Simon Heeke; Christelle Bonnetaud; Jean-Marc Félix; Lydia Ribeyre; Coraline Bence; Marius Ilié; Olivier Bordone; Marine Pedro; Priscilla Maitre; Virginie Tanga; Emmanuelle Gormally; Pascal Mossuz; Philippe Lorimier; Charles Hugo Marquette; Jérôme Mouroux; Charlotte Cohen; Sandra Lassalle; Elodie Long-Mira; Bruno Clément; Georges Dagher; Véronique Hofman; Paul Hofman
Journal:  Cancers (Basel)       Date:  2018-06-11       Impact factor: 6.639

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