Literature DB >> 12871218

Genomic structure around joining segments and constant regions of swine T-cell receptor alpha/delta (TRA/TRD) locus.

Hirohide Uenishi1, Hideki Hiraiwa, Ryuji Yamamoto, Hiroshi Yasue, Yohtaroh Takagaki, Takashi Shiina, Eri Kikkawa, Hidetoshi Inoko, Takashi Awata.   

Abstract

A complete genomic region of 131.2 kb including the swine T-cell receptor alpha/delta constant region (TRAC/TRDC) and joining segments (TRAJ/TRDJ) was sequenced. The structure of this region was strikingly conserved in comparison to that of human or mouse. All of the 61 TRAJ segments detected in the human genomic sequence were detected in the swine sequence and the sequence of the protein binding site of T early alpha, the sequence of the alpha enhancer element and the conserved sequence block between TRAJ3 and TRAJ4 are highly conserved. Insertion of the repetitive sequences that interspersed after the differentiation of the species in mammals such as short interspersed nucleotide elements is markedly suppressed in comparison to other genomic regions, while the composition of the mammalian-wide interspersed sequences is relatively conserved in human and swine. This observation indicates the existence of a highly selective pressure to conserve this genomic region around TRAJ throughout the evolution of mammals.

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Year:  2003        PMID: 12871218      PMCID: PMC1783003          DOI: 10.1046/j.1365-2567.2003.01695.x

Source DB:  PubMed          Journal:  Immunology        ISSN: 0019-2805            Impact factor:   7.397


  53 in total

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Journal:  Nature       Date:  1987 Dec 24-31       Impact factor: 49.962

5.  Characterization of an avian (Gallus gallus domesticus) TCR alpha delta gene locus.

Authors:  T Kubota; J Wang; T W Göbel; R D Hockett; M D Cooper; C H Chen
Journal:  J Immunol       Date:  1999-10-01       Impact factor: 5.422

6.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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Authors:  A Winoto; D Baltimore
Journal:  EMBO J       Date:  1989-03       Impact factor: 11.598

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Authors:  S Luria; G Gross; M Horowitz; D Givol
Journal:  EMBO J       Date:  1987-11       Impact factor: 11.598

9.  Diversity and organization of human T cell receptor delta variable gene segments.

Authors:  S Hata; M Clabby; P Devlin; H Spits; J E De Vries; M S Krangel
Journal:  J Exp Med       Date:  1989-01-01       Impact factor: 14.307

10.  Regulation of transcription of the human T cell antigen receptor delta chain gene. A T lineage-specific enhancer element is located in the J delta 3-C delta intron.

Authors:  J C Bories; P Loiseau; L d'Auriol; C Gontier; A Bensussan; L Degos; F Sigaux
Journal:  J Exp Med       Date:  1990-01-01       Impact factor: 14.307

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  10 in total

1.  Comparative analysis of the chicken TCRα/δ locus.

Authors:  Zuly E Parra; Robert D Miller
Journal:  Immunogenetics       Date:  2012-05-17       Impact factor: 2.846

Review 2.  The isolator piglet: a model for studying the development of adaptive immunity.

Authors:  J E Butler; Marek Sinkora
Journal:  Immunol Res       Date:  2007       Impact factor: 2.829

3.  Comparison of the expressed porcine Vbeta and Jbeta repertoire of thymocytes and peripheral T cells.

Authors:  John E Butler; Nancy Wertz; Jishan Sun; Randy E Sacco
Journal:  Immunology       Date:  2005-02       Impact factor: 7.397

4.  TRAV gene usage in pig T-cell receptor alpha cDNA.

Authors:  Ryuji Yamamoto; Hirohide Uenishi; Hiromi Hatsuse; Eimei Sato; Takashi Awata; Hiroshi Yasue; Yohtaroh Takagaki
Journal:  Immunogenetics       Date:  2005-04-05       Impact factor: 2.846

5.  Signal joint T-cell receptor excision circle assay in miniature swine.

Authors:  Prashanth Vallabhajosyula; Aseda Tena; Kazuhiko Yamada; David H Sachs
Journal:  Transplantation       Date:  2011-09-27       Impact factor: 4.939

6.  PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.

Authors:  Hirohide Uenishi; Tomoko Eguchi; Kohei Suzuki; Tetsuya Sawazaki; Daisuke Toki; Hiroki Shinkai; Naohiko Okumura; Noriyuki Hamasima; Takashi Awata
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

7.  Mucosal-Associated Invariant T Cells Expressing the TRAV1-TRAJ33 Chain Are Present in Pigs.

Authors:  Xingxing Xiao; Kun Li; Xueting Ma; Baohong Liu; Xueyang He; Shunli Yang; Wenqing Wang; Baoyu Jiang; Jianping Cai
Journal:  Front Immunol       Date:  2019-09-03       Impact factor: 7.561

8.  Structural and functional annotation of the porcine immunome.

Authors:  Harry D Dawson; Jane E Loveland; Géraldine Pascal; James G R Gilbert; Hirohide Uenishi; Katherine M Mann; Yongming Sang; Jie Zhang; Denise Carvalho-Silva; Toby Hunt; Matthew Hardy; Zhiliang Hu; Shu-Hong Zhao; Anna Anselmo; Hiroki Shinkai; Celine Chen; Bouabid Badaoui; Daniel Berman; Clara Amid; Mike Kay; David Lloyd; Catherine Snow; Takeya Morozumi; Ryan Pei-Yen Cheng; Megan Bystrom; Ronan Kapetanovic; John C Schwartz; Ranjit Kataria; Matthew Astley; Eric Fritz; Charles Steward; Mark Thomas; Laurens Wilming; Daisuke Toki; Alan L Archibald; Bertrand Bed'Hom; Dario Beraldi; Ting-Hua Huang; Tahar Ait-Ali; Frank Blecha; Sara Botti; Tom C Freeman; Elisabetta Giuffra; David A Hume; Joan K Lunney; Michael P Murtaugh; James M Reecy; Jennifer L Harrow; Claire Rogel-Gaillard; Christopher K Tuggle
Journal:  BMC Genomics       Date:  2013-05-15       Impact factor: 3.969

9.  Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:  Martien A M Groenen; Alan L Archibald; Hirohide Uenishi; Christopher K Tuggle; Yasuhiro Takeuchi; Max F Rothschild; Claire Rogel-Gaillard; Chankyu Park; Denis Milan; Hendrik-Jan Megens; Shengting Li; Denis M Larkin; Heebal Kim; Laurent A F Frantz; Mario Caccamo; Hyeonju Ahn; Bronwen L Aken; Anna Anselmo; Christian Anthon; Loretta Auvil; Bouabid Badaoui; Craig W Beattie; Christian Bendixen; Daniel Berman; Frank Blecha; Jonas Blomberg; Lars Bolund; Mirte Bosse; Sara Botti; Zhan Bujie; Megan Bystrom; Boris Capitanu; Denise Carvalho-Silva; Patrick Chardon; Celine Chen; Ryan Cheng; Sang-Haeng Choi; William Chow; Richard C Clark; Christopher Clee; Richard P M A Crooijmans; Harry D Dawson; Patrice Dehais; Fioravante De Sapio; Bert Dibbits; Nizar Drou; Zhi-Qiang Du; Kellye Eversole; João Fadista; Susan Fairley; Thomas Faraut; Geoffrey J Faulkner; Katie E Fowler; Merete Fredholm; Eric Fritz; James G R Gilbert; Elisabetta Giuffra; Jan Gorodkin; Darren K Griffin; Jennifer L Harrow; Alexander Hayward; Kerstin Howe; Zhi-Liang Hu; Sean J Humphray; Toby Hunt; Henrik Hornshøj; Jin-Tae Jeon; Patric Jern; Matthew Jones; Jerzy Jurka; Hiroyuki Kanamori; Ronan Kapetanovic; Jaebum Kim; Jae-Hwan Kim; Kyu-Won Kim; Tae-Hun Kim; Greger Larson; Kyooyeol Lee; Kyung-Tai Lee; Richard Leggett; Harris A Lewin; Yingrui Li; Wansheng Liu; Jane E Loveland; Yao Lu; Joan K Lunney; Jian Ma; Ole Madsen; Katherine Mann; Lucy Matthews; Stuart McLaren; Takeya Morozumi; Michael P Murtaugh; Jitendra Narayan; Dinh Truong Nguyen; Peixiang Ni; Song-Jung Oh; Suneel Onteru; Frank Panitz; Eung-Woo Park; Hong-Seog Park; Geraldine Pascal; Yogesh Paudel; Miguel Perez-Enciso; Ricardo Ramirez-Gonzalez; James M Reecy; Sandra Rodriguez-Zas; Gary A Rohrer; Lauretta Rund; Yongming Sang; Kyle Schachtschneider; Joshua G Schraiber; John Schwartz; Linda Scobie; Carol Scott; Stephen Searle; Bertrand Servin; Bruce R Southey; Goran Sperber; Peter Stadler; Jonathan V Sweedler; Hakim Tafer; Bo Thomsen; Rashmi Wali; Jian Wang; Jun Wang; Simon White; Xun Xu; Martine Yerle; Guojie Zhang; Jianguo Zhang; Jie Zhang; Shuhong Zhao; Jane Rogers; Carol Churcher; Lawrence B Schook
Journal:  Nature       Date:  2012-11-15       Impact factor: 49.962

10.  CD3ε+ Cells in Pigs With Severe Combined Immunodeficiency Due to Defects in ARTEMIS.

Authors:  Adeline N Boettcher; A Giselle Cino-Ozuna; Yash Solanki; Jayne E Wiarda; Ellie Putz; Jeana L Owens; Sara A Crane; Amanda P Ahrens; Crystal L Loving; Joan E Cunnick; Raymond R R Rowland; Sara E Charley; Jack C M Dekkers; Christopher K Tuggle
Journal:  Front Immunol       Date:  2020-03-31       Impact factor: 7.561

  10 in total

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