Literature DB >> 12859597

A Gambian TNF haplotype matches the European HLA-A1,B8,DR3 and Chinese HLA-A33,B58,DR3 haplotypes.

P Price1, P Bolitho, A Jaye, M Glasson, L-M Yindom, G Sirugo, D Chase, J McDermid, H Whittle.   

Abstract

Caucasians carry TNFA-308*2 in the 8.1 ancestral haplotype (AH) (HLA-A1,B8,DR3). In Gambians, TNFA-308*2 occurs without HLA-B8 or -DR3, suggesting an independent effect of TNFA-308 on disease. Hence we sought a segment of the 8.1 AH in Gambians. BAT1 (intron 10)*2 was selected as a specific marker of the haplotype and was found with TNFA-308*2 in Gambians. Samples homozygous at TNFA-308 and BAT1 (intron 10) demonstrated identity between the African TNFA-308*2 haplotype, the 8.1AH and the Asian diabetogenic 58.1AH (HLA-A33,B58,DR3) across a region spanning BAT1, ATP6G, IKBL, LTA, TNFA, LTB, LST-1 and AIF-1. Conservation of this block in geographically distinct populations suggests a common evolutionary origin and challenges current views of the role of TNFA-308*2 in disease.

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Year:  2003        PMID: 12859597     DOI: 10.1034/j.1399-0039.2003.00083.x

Source DB:  PubMed          Journal:  Tissue Antigens        ISSN: 0001-2815


  3 in total

1.  Tumor necrosis factor (TNF) and lymphotoxin-alpha (LTA) polymorphisms and risk of non-Hodgkin lymphoma in the InterLymph Consortium.

Authors:  Christine F Skibola; Paige M Bracci; Alexandra Nieters; Angela Brooks-Wilson; Silvia de Sanjosé; Ann Maree Hughes; James R Cerhan; Danica R Skibola; Mark Purdue; Eleanor Kane; Qing Lan; Lenka Foretova; Maryjean Schenk; John J Spinelli; Susan L Slager; Anneclaire J De Roos; Martyn T Smith; Eve Roman; Wendy Cozen; Paolo Boffetta; Anne Kricker; Tongzhang Zheng; Tracy Lightfoot; Pierluigi Cocco; Yolanda Benavente; Yawei Zhang; Patricia Hartge; Martha S Linet; Nikolaus Becker; Paul Brennan; Luoping Zhang; Bruce Armstrong; Alex Smith; Renee Shiao; Anne J Novak; Marc Maynadie; Stephen J Chanock; Anthony Staines; Theodore R Holford; Elizabeth A Holly; Nathaniel Rothman; Sophia S Wang
Journal:  Am J Epidemiol       Date:  2010-01-04       Impact factor: 4.897

2.  Higher LPS-stimulated TNF-alpha mRNA levels in peripheral blood mononuclear cells from Chinese ankylosing spondylitis patients with -308G/A polymorphism in promoter region of tumor necrosis factor: association with distinct A33/B58/Cw10 haplotypes.

Authors:  Ming-Chi Lu; K L Yang; Chien-Hsueh Tung; Kuang-Yung Huang; Hui-Chun Yu; Su-Qin Liu; Ning-Sheng Lai
Journal:  Rheumatol Int       Date:  2008-08-22       Impact factor: 3.580

3.  LTA + 252A > G polymorphism is associated with risk of nasal NK/T-cell lymphoma in a Chinese population: a case-control study.

Authors:  Sensen Cheng; Jianzhong Li; Wenjian Liu; Chengxiang Liu; Lei Su; Xiuchun Liu; Liangjun Guo; Yuan Ma; Bao Song; Jie Liu
Journal:  BMC Cancer       Date:  2015-06-25       Impact factor: 4.430

  3 in total

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