Literature DB >> 12857173

Origins of chevron rollovers in non-two-state protein folding kinetics.

Hüseyin Kaya1, Hue Sun Chan.   

Abstract

Chevron rollovers of some proteins imply that their logarithmic folding rates are nonlinear in native stability. This is predicted by lattice and continuum Gō models to arise from diminished accessibilities of the ground state from transiently populated compact conformations under strongly native conditions. Despite these models' native-centric interactions, the slowdown is due partly to kinetic trapping caused by some of the folding intermediates' non-native topologies. Notably, simple two-state folding kinetics of small single-domain proteins are not reproduced by common Gō-like schemes.

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Year:  2003        PMID: 12857173     DOI: 10.1103/PhysRevLett.90.258104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  13 in total

1.  Probing the kinetics of single molecule protein folding.

Authors:  Vitor B P Leite; José N Onuchic; George Stell; Jin Wang
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

2.  Chevron behavior and isostable enthalpic barriers in protein folding: successes and limitations of simple Gō-like modeling.

Authors:  Hüseyin Kaya; Zhirong Liu; Hue Sun Chan
Journal:  Biophys J       Date:  2005-04-29       Impact factor: 4.033

3.  Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding.

Authors:  Arash Zarrine-Afsar; Stefan Wallin; A Mirela Neculai; Philipp Neudecker; P Lynne Howell; Alan R Davidson; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-14       Impact factor: 11.205

4.  How well does a funneled energy landscape capture the folding mechanism of spectrin domains?

Authors:  Robert B Best
Journal:  J Phys Chem B       Date:  2013-08-16       Impact factor: 2.991

5.  Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins.

Authors:  Zhuqing Zhang; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-29       Impact factor: 11.205

6.  Green-lighting green fluorescent protein: faster and more efficient folding by eliminating a cis-trans peptide isomerization event.

Authors:  David J Rosenman; Yao-ming Huang; Ke Xia; Keith Fraser; Victoria E Jones; Colleen M Lamberson; Patrick Van Roey; Wilfredo Colón; Christopher Bystroff
Journal:  Protein Sci       Date:  2014-01-30       Impact factor: 6.725

7.  The role of high-dimensional diffusive search, stabilization, and frustration in protein folding.

Authors:  Supreecha Rimratchada; Tom C B McLeish; Sheena E Radford; Emanuele Paci
Journal:  Biophys J       Date:  2014-04-15       Impact factor: 4.033

8.  Mutational Analysis of Protein Folding Transition States: Phi Values.

Authors:  Luis Alberto Campos
Journal:  Methods Mol Biol       Date:  2022

9.  Protein folding: adding a nucleus to guide helix docking reduces landscape roughness.

Authors:  Beth G Wensley; Lee Gyan Kwa; Sarah L Shammas; Joseph M Rogers; Jane Clarke
Journal:  J Mol Biol       Date:  2012-08-20       Impact factor: 5.469

10.  Discrete kinetic models from funneled energy landscape simulations.

Authors:  Nicholas P Schafer; Ryan M B Hoffman; Anat Burger; Patricio O Craig; Elizabeth A Komives; Peter G Wolynes
Journal:  PLoS One       Date:  2012-12-12       Impact factor: 3.240

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