Literature DB >> 12853643

The Arabidopsis AtLIG4 gene is required for the repair of DNA damage, but not for the integration of Agrobacterium T-DNA.

Haico van Attikum1, Paul Bundock, René M Overmeer, Lan-Ying Lee, Stanton B Gelvin, Paul J J Hooykaas.   

Abstract

The joining of breaks in the chromosomal DNA backbone by ligases in processes of replication, recombination and repair plays a crucial role in the maintenance of genomic stability. Four ATP-dependent ligases, designated DNA ligases I-IV, have been identified in higher eukaryotes, and each one has distinct functions. In mammals and yeast, DNA ligase IV is exclusively involved in the repair of DNA double-strand breaks by non-homologous end joining. Recently, an Arabidopsis thaliana orthologue of the yeast and mammalian DNA ligase IV gene was found and termed AtLIG4. Here we describe the isolation and functional characterisation of a plant line with a T-DNA insertion in the AtLIG4 gene. Plants homozygous for the T-DNA insertion did not display any growth or developmental defects and were fertile. However, mutant seedlings were hypersensitive to the DNA-damaging agents methyl methanesulfonate and X-rays, demonstrating that AtLIG4 is required for the repair of DNA damage. Recently, we showed that a yeast lig4 mutant is deficient in Agrobacterium T-DNA integration. However, using tumorigenesis and germline transformation assays, we found that the plant AtLIG4 mutant is not impaired in T-DNA integration. Thus, in contrast to yeast, DNA ligase IV is not required for T-DNA integration in plants.

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Year:  2003        PMID: 12853643      PMCID: PMC165973          DOI: 10.1093/nar/gkg458

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  53 in total

Review 1.  T-DNA as an insertional mutagen in Arabidopsis.

Authors:  P J Krysan; J C Young; M R Sussman
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

Review 2.  DNA double-strand break repair.

Authors:  C Featherstone; S P Jackson
Journal:  Curr Biol       Date:  1999-10-21       Impact factor: 10.834

3.  Distribution of 1000 sequenced T-DNA tags in the Arabidopsis genome.

Authors:  László Szabados; Izabella Kovács; Attila Oberschall; Edit Abrahám; Irén Kerekes; Laura Zsigmond; Réka Nagy; Martha Alvarado; Inga Krasovskaja; Mónika Gál; Anikó Berente; George P Rédei; Amit Ben Haim; Csaba Koncz
Journal:  Plant J       Date:  2002-10       Impact factor: 6.417

4.  An Arabidopsis histone H2A mutant is deficient in Agrobacterium T-DNA integration.

Authors:  K S Mysore; J Nam; S B Gelvin
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

5.  Telomere length deregulation and enhanced sensitivity to genotoxic stress in Arabidopsis mutants deficient in Ku70.

Authors:  Karel Riha; J Matthew Watson; Jeffrey Parkey; Dorothy E Shippen
Journal:  EMBO J       Date:  2002-06-03       Impact factor: 11.598

6.  Identification of T-DNA tagged Arabidopsis mutants that are resistant to transformation by Agrobacterium.

Authors:  J Nam; K S Mysore; C Zheng; M K Knue; A G Matthysse; S B Gelvin
Journal:  Mol Gen Genet       Date:  1999-04

7.  T-DNA from Agrobacterium tumefaciens as an efficient tool for gene targeting in Kluyveromyces lactis.

Authors:  P Bundock; K Mróczek; A A Winkler; H Y Steensma; P J Hooykaas
Journal:  Mol Gen Genet       Date:  1999-02

8.  Increased telomere length and hypersensitivity to DNA damaging agents in an Arabidopsis KU70 mutant.

Authors:  Paul Bundock; Haico van Attikum; Paul Hooykaas
Journal:  Nucleic Acids Res       Date:  2002-08-01       Impact factor: 16.971

9.  Severe developmental defects, hypersensitivity to DNA-damaging agents, and lengthened telomeres in Arabidopsis MRE11 mutants.

Authors:  Paul Bundock; Paul Hooykaas
Journal:  Plant Cell       Date:  2002-10       Impact factor: 11.277

10.  Disruption of the Arabidopsis AtKu80 gene demonstrates an essential role for AtKu80 protein in efficient repair of DNA double-strand breaks in vivo.

Authors:  Christopher E West; Wanda M Waterworth; Geraint W Story; Paul A Sunderland; Qing Jiang; Clifford M Bray
Journal:  Plant J       Date:  2002-08       Impact factor: 6.417

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  36 in total

1.  The SET domain protein Metnase mediates foreign DNA integration and links integration to nonhomologous end-joining repair.

Authors:  Suk-Hee Lee; Masahiko Oshige; Stephen T Durant; Kanwaldeep Kaur Rasila; Elizabeth A Williamson; Heather Ramsey; Lori Kwan; Jac A Nickoloff; Robert Hromas
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-06       Impact factor: 11.205

2.  End-joining repair of double-strand breaks in Drosophila melanogaster is largely DNA ligase IV independent.

Authors:  Mitch McVey; Dora Radut; Jeff J Sekelsky
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

Review 3.  Agrobacterium in the genomics age.

Authors:  Stanton B Gelvin
Journal:  Plant Physiol       Date:  2009-05-13       Impact factor: 8.340

4.  A DNA ligase required for active DNA demethylation and genomic imprinting in Arabidopsis.

Authors:  Yan Li; Cheng-Guo Duan; Xiaohong Zhu; Weiqiang Qian; Jian-Kang Zhu
Journal:  Cell Res       Date:  2015-04-24       Impact factor: 25.617

Review 5.  DNA repair and recombination functions in Arabidopsis telomere maintenance.

Authors:  Maria E Gallego; Charles I White
Journal:  Chromosome Res       Date:  2005       Impact factor: 5.239

6.  Molecular analysis of Agrobacterium T-DNA integration in tomato reveals a role for left border sequence homology in most integration events.

Authors:  Colwyn M Thomas; Jonathan D G Jones
Journal:  Mol Genet Genomics       Date:  2007-06-16       Impact factor: 3.291

7.  Site-specific integration of Agrobacterium tumefaciens T-DNA via double-stranded intermediates.

Authors:  Tzvi Tzfira; Leah Renée Frankman; Manjusha Vaidya; Vitaly Citovsky
Journal:  Plant Physiol       Date:  2003-10-09       Impact factor: 8.340

8.  Agrobacterium may delay plant nonhomologous end-joining DNA repair via XRCC4 to favor T-DNA integration.

Authors:  Zarir E Vaghchhipawala; Balaji Vasudevan; Seonghee Lee; Mustafa R Morsy; Kirankumar S Mysore
Journal:  Plant Cell       Date:  2012-10-12       Impact factor: 11.277

9.  Molecular analysis of telomere fusions in Arabidopsis: multiple pathways for chromosome end-joining.

Authors:  Michelle Heacock; Elizabeth Spangler; Karel Riha; Jasna Puizina; Dorothy E Shippen
Journal:  EMBO J       Date:  2004-05-13       Impact factor: 11.598

10.  DNA ligase 1 deficient plants display severe growth defects and delayed repair of both DNA single and double strand breaks.

Authors:  Wanda M Waterworth; Jaroslav Kozak; Claire M Provost; Clifford M Bray; Karel J Angelis; Christopher E West
Journal:  BMC Plant Biol       Date:  2009-06-26       Impact factor: 4.215

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