Literature DB >> 12849783

Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms.

Stefan Radajewski1, Ian R McDonald, J Colin Murrell.   

Abstract

Phylogeny based on ribosomal RNA sequences alone is rarely a reliable indicator of microbial function. To circumvent this problem, nucleic acid based techniques have been developed that exploit the physical properties of stable isotopes to study microbially mediated processes within complex environmental samples. Investigations using labelled substrates, or which detect variations in the natural abundance of isotopes, have thus revealed the metabolic function of microorganisms without the need to isolate them in culture.

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Year:  2003        PMID: 12849783     DOI: 10.1016/s0958-1669(03)00064-8

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  51 in total

1.  Shifts in identity and activity of methanotrophs in arctic lake sediments in response to temperature changes.

Authors:  Ruo He; Matthew J Wooller; John W Pohlman; John Quensen; James M Tiedje; Mary Beth Leigh
Journal:  Appl Environ Microbiol       Date:  2012-04-20       Impact factor: 4.792

2.  Diversity of active aerobic methanotrophs along depth profiles of arctic and subarctic lake water column and sediments.

Authors:  Ruo He; Matthew J Wooller; John W Pohlman; John Quensen; James M Tiedje; Mary Beth Leigh
Journal:  ISME J       Date:  2012-05-17       Impact factor: 10.302

3.  13C-carrier DNA shortens the incubation time needed to detect benzoate-utilizing denitrifying bacteria by stable-isotope probing.

Authors:  E Gallagher; L McGuinness; C Phelps; L Y Young; L J Kerkhof
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

4.  Population dynamics within a microbial consortium during growth on diesel fuel in saline environments.

Authors:  Sabine Kleinsteuber; Volker Riis; Ingo Fetzer; Hauke Harms; Susann Müller
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

5.  mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarray.

Authors:  Levente Bodrossy; Nancy Stralis-Pavese; Marianne Konrad-Köszler; Alexandra Weilharter; Thomas G Reichenauer; David Schöfer; Angela Sessitsch
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

Review 6.  Molecular ecology techniques for the study of aerobic methanotrophs.

Authors:  Ian R McDonald; Levente Bodrossy; Yin Chen; J Colin Murrell
Journal:  Appl Environ Microbiol       Date:  2007-12-28       Impact factor: 4.792

Review 7.  Enumeration of methanogens with a focus on fluorescence in situ hybridization.

Authors:  Sanjay Kumar; Sumit Singh Dagar; Ashok Kumar Mohanty; Sunil Kumar Sirohi; Monica Puniya; Ramesh C Kuhad; K P S Sangu; Gareth Wyn Griffith; Anil Kumar Puniya
Journal:  Naturwissenschaften       Date:  2011-04-08

8.  Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil.

Authors:  David R Singleton; Sabrina N Powell; Ramiah Sangaiah; Avram Gold; Louise M Ball; Michael D Aitken
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

9.  Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

Authors:  Wei E Huang; Andrew Ferguson; Andrew C Singer; Kathryn Lawson; Ian P Thompson; Robert M Kalin; Michael J Larkin; Mark J Bailey; Andrew S Whiteley
Journal:  Appl Environ Microbiol       Date:  2008-11-07       Impact factor: 4.792

10.  Calculation of partial isotope incorporation into peptides measured by mass spectrometry.

Authors:  Ingo Fetzer; Nico Jehmlich; Carsten Vogt; Hans-Hermann Richnow; Jana Seifert; Hauke Harms; Martin von Bergen; Frank Schmidt
Journal:  BMC Res Notes       Date:  2010-06-24
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