Literature DB >> 16461725

mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarray.

Levente Bodrossy1, Nancy Stralis-Pavese, Marianne Konrad-Köszler, Alexandra Weilharter, Thomas G Reichenauer, David Schöfer, Angela Sessitsch.   

Abstract

A method was developed for the mRNA-based application of microbial diagnostic microarrays to detect active microbial populations. DNA- and mRNA-based analyses of environmental samples were compared and confirmed via quantitative PCR. Results indicated that mRNA-based microarray analyses may provide additional information on the composition and functioning of microbial communities.

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Year:  2006        PMID： 16461725      PMCID： PMC1392935          DOI： 10.1128/AEM.72.2.1672-1676.2006

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  15 in total

1.  Stable-isotope probing as a tool in microbial ecology.

Authors:  S Radajewski; P Ineson; N R Parekh; J C Murrell
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

Review 2.  Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology.

Authors:  R Amann; W Ludwig
Journal:  FEMS Microbiol Rev       Date:  2000-12       Impact factor: 16.408

3.  Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation.

Authors:  G Eller; S Stubner; P Frenzel
Journal:  FEMS Microbiol Lett       Date:  2001-05-01       Impact factor: 2.742

4.  A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community.

Authors:  Markus M Moeseneder; Jesus M Arrieta; Gerhard J Herndl
Journal:  FEMS Microbiol Ecol       Date:  2004-11-11       Impact factor: 4.194

Review 5.  Methanotrophic bacteria.

Authors:  R S Hanson; T E Hanson
Journal:  Microbiol Rev       Date:  1996-06

6.  RNA stable isotope probing, a novel means of linking microbial community function to phylogeny.

Authors:  Mike Manefield; Andrew S Whiteley; Robert I Griffiths; Mark J Bailey
Journal:  Appl Environ Microbiol       Date:  2002-11       Impact factor: 4.792

7.  mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil.

Authors:  Helmut Bürgmann; Franco Widmer; William V Sigler; Josef Zeyer
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

8.  Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays.

Authors:  Steffen Kolb; Claudia Knief; Stephan Stubner; Ralf Conrad
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

Review 9.  Oligonucleotide microarrays in microbial diagnostics.

Authors:  Levente Bodrossy; Angela Sessitsch
Journal:  Curr Opin Microbiol       Date:  2004-06       Impact factor: 7.934

10.  Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers.

Authors:  Nancy Stralis-Pavese; Angela Sessitsch; Alexandra Weilharter; Thomas Reichenauer; Johann Riesing; József Csontos; J Colin Murrell; Levente Bodrossy
Journal:  Environ Microbiol       Date:  2004-04       Impact factor: 5.491
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  19 in total

1.  Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations.

Authors:  Marina G Kalyuzhnaya; Rebecca Zabinsky; Sarah Bowerman; David R Baker; Mary E Lidstrom; Ludmila Chistoserdova
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

2.  Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.

Authors:  Haichun Gao; Zamin K Yang; Terry J Gentry; Liyou Wu; Christopher W Schadt; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-11-10       Impact factor: 4.792

3.  Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis.

Authors:  Zhili He; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2008-03-14       Impact factor: 4.792

Review 4.  Molecular ecology techniques for the study of aerobic methanotrophs.

Authors:  Ian R McDonald; Levente Bodrossy; Yin Chen; J Colin Murrell
Journal:  Appl Environ Microbiol       Date:  2007-12-28       Impact factor: 4.792

5.  Rapid extraction of total RNA from an anaerobic sludge biocoenosis.

Authors:  Simon Rittmann; Peter Holubar
Journal:  Folia Microbiol (Praha)       Date:  2013-08-30       Impact factor: 2.099

6.  Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities.

Authors:  Yuting Liang; Zhili He; Liyou Wu; Ye Deng; Guanghe Li; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2009-12-28       Impact factor: 4.792

7.  Analysis of methanotroph community composition using a pmoA-based microbial diagnostic microarray.

Authors:  Nancy Stralis-Pavese; Guy C J Abell; Angela Sessitsch; Levente Bodrossy
Journal:  Nat Protoc       Date:  2011-04-14       Impact factor: 13.491

8.  One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic-anoxic interface in a flooded paddy soil.

Authors:  Andreas Reim; Claudia Lüke; Sascha Krause; Jennifer Pratscher; Peter Frenzel
Journal:  ISME J       Date:  2012-06-14       Impact factor: 10.302

9.  Transcriptome analysis of Lactococcus lactis in coculture with Saccharomyces cerevisiae.

Authors:  Mathieu Maligoy; Myriam Mercade; Muriel Cocaign-Bousquet; Pascal Loubiere
Journal:  Appl Environ Microbiol       Date:  2007-11-09       Impact factor: 4.792

10.  Use of functional gene arrays for elucidating in situ biodegradation.

Authors:  Joy D Van Nostrand; Zhili He; Jizhong Zhou
Journal:  Front Microbiol       Date:  2012-09-21       Impact factor: 5.640
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