Literature DB >> 12840006

Xenopus origin recognition complex (ORC) initiates DNA replication preferentially at sequences targeted by Schizosaccharomyces pombe ORC.

Daochun Kong1, Thomas R Coleman, Melvin L DePamphilis.   

Abstract

Budding yeast (Saccharomyces cerevisiae) origin recognition complex (ORC) requires ATP to bind specific DNA sequences, whereas fission yeast (Schizosaccharomyces pombe) ORC binds to specific, asymmetric A:T-rich sites within replication origins, independently of ATP, and frog (Xenopus laevis) ORC seems to bind DNA non-specifically. Here we show that despite these differences, ORCs are functionally conserved. Firstly, SpOrc1, SpOrc4 and SpOrc5, like those from other eukaryotes, bound ATP and exhibited ATPase activity, suggesting that ATP is required for pre-replication complex (pre-RC) assembly rather than origin specificity. Secondly, SpOrc4, which is solely responsible for binding SpORC to DNA, inhibited up to 70% of XlORC-dependent DNA replication in Xenopus egg extract by preventing XlORC from binding to chromatin and assembling pre-RCs. Chromatin-bound SpOrc4 was located at AT-rich sequences. XlORC in egg extract bound preferentially to asymmetric A:T-sequences in either bare DNA or in sperm chromatin, and it recruited XlCdc6 and XlMcm proteins to these sequences. These results reveal that XlORC initiates DNA replication preferentially at the same or similar sites to those targeted in S.pombe.

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Year:  2003        PMID: 12840006      PMCID: PMC165644          DOI: 10.1093/emboj/cdg319

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  54 in total

1.  Start sites of bidirectional DNA synthesis at the human lamin B2 origin.

Authors:  G Abdurashidova; M Deganuto; R Klima; S Riva; G Biamonti; M Giacca; A Falaschi
Journal:  Science       Date:  2000-03-17       Impact factor: 47.728

Review 2.  Initiation of eukaryotic DNA replication: conservative or liberal?

Authors:  J A Bogan; D A Natale; M L Depamphilis
Journal:  J Cell Physiol       Date:  2000-08       Impact factor: 6.384

3.  The Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein.

Authors:  J K Lee; K Y Moon; Y Jiang; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

4.  Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element.

Authors:  R J Austin; T L Orr-Weaver; S P Bell
Journal:  Genes Dev       Date:  1999-10-15       Impact factor: 11.361

5.  Site-specific DNA binding of the Schizosaccharomyces pombe origin recognition complex is determined by the Orc4 subunit.

Authors:  D Kong; M L DePamphilis
Journal:  Mol Cell Biol       Date:  2001-12       Impact factor: 4.272

6.  Interaction of fission yeast ORC with essential adenine/thymine stretches in replication origins.

Authors:  T Takahashi; H Masukata
Journal:  Genes Cells       Date:  2001-10       Impact factor: 1.891

7.  Identification and reconstitution of the origin recognition complex from Schizosaccharomyces pombe.

Authors:  K Y Moon; D Kong; J K Lee; S Raychaudhuri; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

8.  Organization of DNA replication origins in the fission yeast genome.

Authors:  M Gómez; F Antequera
Journal:  EMBO J       Date:  1999-10-15       Impact factor: 11.598

9.  Replication dynamics of the yeast genome.

Authors:  M K Raghuraman; E A Winzeler; D Collingwood; S Hunt; L Wodicka; A Conway; D J Lockhart; R W Davis; B J Brewer; W L Fangman
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

10.  Selective activation of pre-replication complexes in vitro at specific sites in mammalian nuclei.

Authors:  C J Li; J A Bogan; D A Natale; M L DePamphilis
Journal:  J Cell Sci       Date:  2000-03       Impact factor: 5.285

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  16 in total

Review 1.  Regulation of DNA replication by chromatin structures: accessibility and recruitment.

Authors:  Makoto T Hayashi; Hisao Masukata
Journal:  Chromosoma       Date:  2010-08-03       Impact factor: 4.316

Review 2.  Eukaryotic DNA replication origins: many choices for appropriate answers.

Authors:  Marcel Méchali
Journal:  Nat Rev Mol Cell Biol       Date:  2010-10       Impact factor: 94.444

3.  Binding of AlF-C, an Orc1-binding transcriptional regulator, enhances replicator activity of the rat aldolase B origin.

Authors:  Hiroyuki Minami; Junko Takahashi; Asami Suto; Yasushi Saitoh; Ken-ichi Tsutsumi
Journal:  Mol Cell Biol       Date:  2006-09-18       Impact factor: 4.272

4.  In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences.

Authors:  Slavica Stanojcic; Jean-Marc Lemaitre; Konstantin Brodolin; Etienne Danis; Marcel Mechali
Journal:  Mol Cell Biol       Date:  2008-06-23       Impact factor: 4.272

Review 5.  Mechanisms and regulation of DNA replication initiation in eukaryotes.

Authors:  Matthew W Parker; Michael R Botchan; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-17       Impact factor: 8.250

6.  The BAH domain facilitates the ability of human Orc1 protein to activate replication origins in vivo.

Authors:  Kohji Noguchi; Alex Vassilev; Soma Ghosh; John L Yates; Melvin L DePamphilis
Journal:  EMBO J       Date:  2006-10-26       Impact factor: 11.598

Review 7.  The chromatin backdrop of DNA replication: lessons from genetics and genome-scale analyses.

Authors:  Amy L Conner; Mirit I Aladjem
Journal:  Biochim Biophys Acta       Date:  2012-02-08

8.  TIF1 Represses rDNA replication initiation, but promotes normal S phase progression and chromosome transmission in Tetrahymena.

Authors:  Tara L Morrison; J Sebastian Yakisich; Donna Cassidy-Hanley; Geoffrey M Kapler
Journal:  Mol Biol Cell       Date:  2005-03-16       Impact factor: 4.138

9.  Human origin recognition complex binds preferentially to G-quadruplex-preferable RNA and single-stranded DNA.

Authors:  Shoko Hoshina; Kei Yura; Honami Teranishi; Noriko Kiyasu; Ayumi Tominaga; Haruka Kadoma; Ayaka Nakatsuka; Tomoko Kunichika; Chikashi Obuse; Shou Waga
Journal:  J Biol Chem       Date:  2013-09-03       Impact factor: 5.157

10.  Role for Cdk1 (Cdc2)/cyclin A in preventing the mammalian origin recognition complex's largest subunit (Orc1) from binding to chromatin during mitosis.

Authors:  Cong-jun Li; Alex Vassilev; Melvin L DePamphilis
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

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