Literature DB >> 12838268

Implications of protein flexibility for drug discovery.

Simon J Teague1.   

Abstract

Proteins are in constant motion between different conformational states with similar energies. This has often been ignored in drug design. However, protein flexibility is fundamental to understanding the ways in which drugs exert biological effects, their binding-site location, binding orientation, binding kinetics, metabolism and transport. Protein flexibility allows increased affinity to be achieved between a drug and its target. This is crucial, because the lipophilicity and number of polar interactions allowed for an oral drug is limited by absorption, distribution, metabolism and toxicology considerations.

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Year:  2003        PMID: 12838268     DOI: 10.1038/nrd1129

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  189 in total

1.  Utilizing experimental data for reducing ensemble size in flexible-protein docking.

Authors:  Mengang Xu; Markus A Lill
Journal:  J Chem Inf Model       Date:  2011-12-19       Impact factor: 4.956

2.  QSAR - a piece of drug design.

Authors:  L Pârvu
Journal:  J Cell Mol Med       Date:  2003 Jul-Sep       Impact factor: 5.310

3.  Modulation of the structural integrity of helix F in apomyoglobin by single amino acid replacements.

Authors:  Paola Picotti; Anna Marabotti; Alessandro Negro; Valeria Musi; Barbara Spolaore; Marcello Zambonin; Angelo Fontana
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

4.  Frozen out: molecular modeling in the age of cryocrystallography.

Authors:  Yvonne C Martin; Steven W Muchmore
Journal:  J Comput Aided Mol Des       Date:  2011-12-24       Impact factor: 3.686

Review 5.  Flexibility and binding affinity in protein-ligand, protein-protein and multi-component protein interactions: limitations of current computational approaches.

Authors:  Pierre Tuffery; Philippe Derreumaux
Journal:  J R Soc Interface       Date:  2011-10-12       Impact factor: 4.118

6.  Docking flexible ligands in proteins with a solvent exposure- and distance-dependent dielectric function.

Authors:  Daniel P Garden; Boris S Zhorov
Journal:  J Comput Aided Mol Des       Date:  2010-01-30       Impact factor: 3.686

7.  Structural insight and flexible features of NS5 proteins from all four serotypes of Dengue virus in solution.

Authors:  Wuan Geok Saw; Giancarlo Tria; Ardina Grüber; Malathy Sony Subramanian Manimekalai; Yongqian Zhao; Arun Chandramohan; Ganesh Srinivasan Anand; Tsutomu Matsui; Thomas M Weiss; Subhash G Vasudevan; Gerhard Grüber
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-10-31

8.  Malarial dihydrofolate reductase as a paradigm for drug development against a resistance-compromised target.

Authors:  Yongyuth Yuthavong; Bongkoch Tarnchompoo; Tirayut Vilaivan; Penchit Chitnumsub; Sumalee Kamchonwongpaisan; Susan A Charman; Danielle N McLennan; Karen L White; Livia Vivas; Emily Bongard; Chawanee Thongphanchang; Supannee Taweechai; Jarunee Vanichtanankul; Roonglawan Rattanajak; Uthai Arwon; Pascal Fantauzzi; Jirundon Yuvaniyama; William N Charman; David Matthews
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-03       Impact factor: 11.205

9.  Recipes for the selection of experimental protein conformations for virtual screening.

Authors:  Manuel Rueda; Giovanni Bottegoni; Ruben Abagyan
Journal:  J Chem Inf Model       Date:  2010-01       Impact factor: 4.956

10.  A quantum mechanic/molecular mechanic study of the wild-type and N155S mutant HIV-1 integrase complexed with diketo acid.

Authors:  Cláudio Nahum Alves; Sergio Martí; Raquel Castillo; Juan Andrés; Vicent Moliner; Iñaki Tuñón; Estanislao Silla
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

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