Literature DB >> 12837787

X-Ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-oligosaccharides.

David Mandelman1, Anne Belaich, J P Belaich, Nushin Aghajari, Hugues Driguez, Richard Haser.   

Abstract

Complete cellulose degradation is the first step in the use of biomass as a source of renewable energy. To this end, the engineering of novel cellulase activity, the activity responsible for the hydrolysis of the beta-1,4-glycosidic bonds in cellulose, is a topic of great interest. The high-resolution X-ray crystal structure of a multidomain endoglucanase from Clostridium cellulolyticum has been determined at a 1.6-A resolution. The endoglucanase, Cel9G, is comprised of a family 9 catalytic domain attached to a family III(c) cellulose-binding domain. The two domains together form a flat platform onto which crystalline cellulose is suggested to bind and be fed into the active-site cleft for endolytic hydrolysis. To further dissect the structural basis of cellulose binding and hydrolysis, the structures of Cel9G in the presence of cellobiose, cellotriose, and a DP-10 thio-oligosaccharide inhibitor were resolved at resolutions of 1.7, 1.8, and 1.9 A, respectively.

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Year:  2003        PMID: 12837787      PMCID: PMC164890          DOI: 10.1128/JB.185.14.4127-4135.2003

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  35 in total

1.  Structure of a family IIIa scaffoldin CBD from the cellulosome of Clostridium cellulolyticum at 2.2 A resolution.

Authors:  L J Shimon; S Pagès; A Belaich; J P Belaich; E A Bayer; R Lamed; Y Shoham; F Frolow
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-12

2.  Implementation of molecular replacement in AMoRe.

Authors:  J Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

3.  ESPript: analysis of multiple sequence alignments in PostScript.

Authors:  P Gouet; E Courcelle; D I Stuart; F Métoz
Journal:  Bioinformatics       Date:  1999-04       Impact factor: 6.937

4.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

5.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

6.  Automated refinement of protein models.

Authors:  V S Lamzin; K S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1993-01-01

Review 7.  Structural aspects of metal liganding to functional groups in proteins.

Authors:  J P Glusker
Journal:  Adv Protein Chem       Date:  1991

8.  Cel9M, a new family 9 cellulase of the Clostridium cellulolyticum cellulosome.

Authors:  Anne Belaich; Goetz Parsiegla; Laurent Gal; Claude Villard; Richard Haser; Jean-Pierre Belaich
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

9.  Crystal structures of the cellulase Cel48F in complex with inhibitors and substrates give insights into its processive action.

Authors:  G Parsiegla; C Reverbel-Leroy; C Tardif; J P Belaich; H Driguez; R Haser
Journal:  Biochemistry       Date:  2000-09-19       Impact factor: 3.162

10.  Sequence analysis of a gene cluster encoding cellulases from Clostridium cellulolyticum.

Authors:  C Bagnara-Tardif; C Gaudin; A Belaich; P Hoest; T Citard; J P Belaich
Journal:  Gene       Date:  1992-09-21       Impact factor: 3.688

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  18 in total

1.  Enzyme diversity of the cellulolytic system produced by Clostridium cellulolyticum explored by two-dimensional analysis: identification of seven genes encoding new dockerin-containing proteins.

Authors:  Jean-Charles Blouzard; Caroline Bourgeois; Pascale de Philip; Odile Valette; Anne Bélaïch; Chantal Tardif; Jean-Pierre Bélaïch; Sandrine Pagès
Journal:  J Bacteriol       Date:  2007-01-05       Impact factor: 3.490

2.  Exploration of new geometries in cellulosome-like chimeras.

Authors:  Florence Mingardon; Angélique Chanal; Chantal Tardif; Edward A Bayer; Henri-Pierre Fierobe
Journal:  Appl Environ Microbiol       Date:  2007-09-28       Impact factor: 4.792

3.  Characterization of all family-9 glycoside hydrolases synthesized by the cellulosome-producing bacterium Clostridium cellulolyticum.

Authors:  Julie Ravachol; Romain Borne; Chantal Tardif; Pascale de Philip; Henri-Pierre Fierobe
Journal:  J Biol Chem       Date:  2014-01-22       Impact factor: 5.157

4.  Biochemical and mutational analyses of a multidomain cellulase/mannanase from Caldicellulosiruptor bescii.

Authors:  Xiaoyun Su; Roderick I Mackie; Isaac K O Cann
Journal:  Appl Environ Microbiol       Date:  2012-01-13       Impact factor: 4.792

5.  Comparison of family 9 cellulases from mesophilic and thermophilic bacteria.

Authors:  Florence Mingardon; John D Bagert; Cyprien Maisonnier; Devin L Trudeau; Frances H Arnold
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

6.  Structure, activity, and stability of metagenome-derived glycoside hydrolase family 9 endoglucanase with an N-terminal Ig-like domain.

Authors:  Hiroyuki Okano; Eiko Kanaya; Masashi Ozaki; Clement Angkawidjaja; Shigenori Kanaya
Journal:  Protein Sci       Date:  2015-01-13       Impact factor: 6.725

7.  A processive GH9 family endoglucanase of Bacillus licheniformis and the role of its carbohydrate-binding domain.

Authors:  Aditi Konar; Shritama Aich; Ranaprathap Katakojwala; Supratim Datta; S Venkata Mohan
Journal:  Appl Microbiol Biotechnol       Date:  2022-08-11       Impact factor: 5.560

8.  Mapping the deformability of natural and designed cellulosomes in solution.

Authors:  Jonathan Dorival; Sarah Moraïs; Aurore Labourel; Bartosz Rozycki; Pierre-Andre Cazade; Jérôme Dabin; Eva Setter-Lamed; Itzhak Mizrahi; Damien Thompson; Aurélien Thureau; Edward A Bayer; Mirjam Czjzek
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-06-20

9.  Substrate recognition and hydrolysis by a family 50 exo-β-agarase, Aga50D, from the marine bacterium Saccharophagus degradans.

Authors:  Benjamin Pluvinage; Jan-Hendrik Hehemann; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2013-08-06       Impact factor: 5.157

10.  Novel clostridial cell-surface hemicellulose-binding CBM3 proteins.

Authors:  Almog Hershko Rimon; Oded Livnah; Inna Rozman Grinberg; Lizett Ortiz de Ora; Oren Yaniv; Raphael Lamed; Edward A Bayer; Felix Frolow; Milana Voronov-Goldman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-03-31       Impact factor: 1.056

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