Literature DB >> 12837591

Quantitative proteomic analysis of chromatin-associated factors.

Yuzuru Shiio1, Robert N Eisenman, Eugene C Yi, Sam Donohoe, David R Goodlett, Ruedi Aebersold.   

Abstract

A method to identify and quantify chromatin-associated proteins has been developed and applied to the analysis of changes in chromatin-associated proteins induced by Myc oncoprotein expression in human B lymphocytes. Chromatin-enriched fractions were isolated by differential detergent/salt extraction and analyzed by ICAT reagent labeling, multi-dimensional chromatography and tandem mass spectrometry. Many known chromatin-associated regulatory factors were identified and quantified. The method will be widely applicable to various biological systems and reveal changes in chromatin-associated regulatory factors that underlie biological phenomena.

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Year:  2003        PMID： 12837591     DOI： 10.1016/S1044-0305(03)00204-6

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN： 1044-0305            Impact factor:   3.109


  19 in total

Review 1.  ATF3 and stress responses.

Authors:  T Hai; C D Wolfgang; D K Marsee; A E Allen; U Sivaprasad
Journal:  Gene Expr       Date:  1999

Review 2.  Deconstructing myc.

Authors:  R N Eisenman
Journal:  Genes Dev       Date:  2001-08-15       Impact factor: 11.361

Review 3.  Function and regulation of the transcription factors of the Myc/Max/Mad network.

Authors:  B Lüscher
Journal:  Gene       Date:  2001-10-17       Impact factor: 3.688

4.  Loss of HCF-1-chromatin association precedes temperature-induced growth arrest of tsBN67 cells.

Authors:  J Wysocka; P T Reilly; W Herr
Journal:  Mol Cell Biol       Date:  2001-06       Impact factor: 4.272

5.  Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.

Authors:  Nitin S Baliga; Min Pan; Young Ah Goo; Eugene C Yi; David R Goodlett; Krassen Dimitrov; Paul Shannon; Ruedi Aebersold; Wailap Victor Ng; Leroy Hood
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-28       Impact factor: 11.205

Review 6.  Function of the c-Myc oncoprotein in chromatin remodeling and transcription.

Authors:  B Amati; S R Frank; D Donjerkovic; S Taubert
Journal:  Biochim Biophys Acta       Date:  2001-03-21

7.  Control of cell growth by c-Myc in the absence of cell division.

Authors:  M Schuhmacher; M S Staege; A Pajic; A Polack; U H Weidle; G W Bornkamm; D Eick; F Kohlhuber
Journal:  Curr Biol       Date:  1999-11-04       Impact factor: 10.834

8.  Chromatin association of human origin recognition complex, cdc6, and minichromosome maintenance proteins during the cell cycle: assembly of prereplication complexes in late mitosis.

Authors:  J Méndez; B Stillman
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

Review 9.  Nuclear actin and actin-related proteins in chromatin remodeling.

Authors:  Ivan A Olave; Samara L Reck-Peterson; Gerald R Crabtree
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

Review 10.  MYC oncogenes and human neoplastic disease.

Authors:  C E Nesbit; J M Tersak; E V Prochownik
Journal:  Oncogene       Date:  1999-05-13       Impact factor: 9.867
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  28 in total

1.  A mass spectrometric journey into protein and proteome research.

Authors:  Ruedi Aebersold
Journal:  J Am Soc Mass Spectrom       Date:  2003-07       Impact factor: 3.109

2.  MCL-1 localizes to sites of DNA damage and regulates DNA damage response.

Authors:  Sarwat Jamil; Cezar Stoica; Tillie-Louise Hackett; Vincent Duronio
Journal:  Cell Cycle       Date:  2010-07-11       Impact factor: 4.534

3.  Interaction of bovine papillomavirus E2 protein with Brd4 stabilizes its association with chromatin.

Authors:  Maria G McPhillips; Keiko Ozato; Alison A McBride
Journal:  J Virol       Date:  2005-07       Impact factor: 5.103

4.  Identification of direct tyrosine kinase substrates based on protein kinase assay-linked phosphoproteomics.

Authors:  Liang Xue; Robert L Geahlen; W Andy Tao
Journal:  Mol Cell Proteomics       Date:  2013-06-22       Impact factor: 5.911

5.  A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry.

Authors:  Richard C Baliban; Peter A DiMaggio; Mariana D Plazas-Mayorca; Nicolas L Young; Benjamin A Garcia; Christodoulos A Floudas
Journal:  Mol Cell Proteomics       Date:  2010-01-26       Impact factor: 5.911

6.  Rat mammary extracellular matrix composition and response to ibuprofen treatment during postpartum involution by differential GeLC-MS/MS analysis.

Authors:  Jenean H O'Brien; Lauren A Vanderlinden; Pepper J Schedin; Kirk C Hansen
Journal:  J Proteome Res       Date:  2012-08-30       Impact factor: 4.466

7.  Proteome-wide analysis of mutant p53 targets in breast cancer identifies new levels of gain-of-function that influence PARP, PCNA, and MCM4.

Authors:  Alla Polotskaia; Gu Xiao; Katherine Reynoso; Che Martin; Wei-Gang Qiu; Ronald C Hendrickson; Jill Bargonetti
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

8.  Matching isotopic distributions from metabolically labeled samples.

Authors:  Sean McIlwain; David Page; Edward L Huttlin; Michael R Sussman
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

9.  An essential role for MCL-1 in ATR-mediated CHK1 phosphorylation.

Authors:  Sarwat Jamil; Shadi Mojtabavi; Payman Hojabrpour; Stefanie Cheah; Vincent Duronio
Journal:  Mol Biol Cell       Date:  2008-05-21       Impact factor: 4.138

10.  Chromatin enrichment for proteomics.

Authors:  Georg Kustatscher; Karen L H Wills; Cristina Furlan; Juri Rappsilber
Journal:  Nat Protoc       Date:  2014-08-07       Impact factor: 13.491
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