Literature DB >> 12837590

A mass spectrometric journey into protein and proteome research.

Ruedi Aebersold1.   

Abstract

It is a frequently debated question whether technology drives biology or whether biology drives the development of new technologies. This issue is discussed in this manuscript as an account that covers approximately a decade during which mass spectrometry and protein biochemistry have intersected. It is shown that the capabilities of the mass spectrometric methods, initially developed to address the specific need to identify proteins reliably and at high sensitivity soon transcended the intended task. The rapid development of mass spectrometric technologies applied to protein research has catalyzed entirely new experimental approaches and opened up new types of biological questions to experimentation, culminating in the field of proteomics. Some conclusions from this case study relating to technological research and the environment in which it is carried out are also discussed.

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Year:  2003        PMID: 12837590     DOI: 10.1016/S1044-0305(03)00289-7

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  48 in total

1.  A systematic approach to the analysis of protein phosphorylation.

Authors:  H Zhou; J D Watts; R Aebersold
Journal:  Nat Biotechnol       Date:  2001-04       Impact factor: 54.908

2.  Accurate quantitation of protein expression and site-specific phosphorylation.

Authors:  Y Oda; K Huang; F R Cross; D Cowburn; B T Chait
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

3.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

4.  Weighing naked proteins: practical, high-accuracy mass measurement of peptides and proteins.

Authors:  B T Chait; S B Kent
Journal:  Science       Date:  1992-09-25       Impact factor: 47.728

5.  The QUEST system for quantitative analysis of two-dimensional gels.

Authors:  J I Garrels
Journal:  J Biol Chem       Date:  1989-03-25       Impact factor: 5.157

6.  Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose.

Authors:  R H Aebersold; J Leavitt; R A Saavedra; L E Hood; S B Kent
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

7.  Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals.

Authors:  J Klose
Journal:  Humangenetik       Date:  1975

8.  The Human Protein Index.

Authors:  N G Anderson; L Anderson
Journal:  Clin Chem       Date:  1982-04       Impact factor: 8.327

9.  A protein sequenator.

Authors:  P Edman; G Begg
Journal:  Eur J Biochem       Date:  1967-03

10.  Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation.

Authors:  Tina Guina; Manhong Wu; Samuel I Miller; Samuel O Purvine; Eugene C Yi; Jimmy Eng; David R Goodlett; Ruedi Aebersold; Robert K Ernst; Kimberly A Lee
Journal:  J Am Soc Mass Spectrom       Date:  2003-07       Impact factor: 3.109

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  19 in total

1.  Proteomic analysis of novel marine bacteria using MALDI and ESI mass spectrometry.

Authors:  Martha D Stapels; Jang-Cheon Cho; Stephen J Giovannoni; Douglas F Barofsky
Journal:  J Biomol Tech       Date:  2004-09

2.  An open design microfabricated nib-like nanoelectrospray emitter tip on a conducting silicon substrate for the application of the ionization voltage.

Authors:  Séverine Le Gac; Christian Rolando; Steve Arscott
Journal:  J Am Soc Mass Spectrom       Date:  2005-12-15       Impact factor: 3.109

Review 3.  Enzymes and related proteins as cancer biomarkers: a proteomic approach.

Authors:  Shu-Ling Liang; Daniel W Chan
Journal:  Clin Chim Acta       Date:  2007-02-20       Impact factor: 3.786

4.  Algorithms for automatic interpretation of high resolution mass spectra.

Authors:  Parminder Kaur; Peter B O'Connor
Journal:  J Am Soc Mass Spectrom       Date:  2006-02-07       Impact factor: 3.109

Review 5.  Accurate mass measurements in proteomics.

Authors:  Tao Liu; Mikhail E Belov; Navdeep Jaitly; Wei-Jun Qian; Richard D Smith
Journal:  Chem Rev       Date:  2007-07-25       Impact factor: 60.622

Review 6.  Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding.

Authors:  Vijay M Krishnamurthy; George K Kaufman; Adam R Urbach; Irina Gitlin; Katherine L Gudiksen; Douglas B Weibel; George M Whitesides
Journal:  Chem Rev       Date:  2008-03       Impact factor: 60.622

Review 7.  Proteomics and the analysis of proteomic data: an overview of current protein-profiling technologies.

Authors:  Erol E Gulcicek; Christopher M Colangelo; Walter McMurray; Kathryn Stone; Kenneth Williams; Terence Wu; Hongyu Zhao; Heidi Spratt; Alexander Kurosky; Baolin Wu
Journal:  Curr Protoc Bioinformatics       Date:  2005-07

8.  Multiplex targeted mass spectrometry assay for one-shot flavivirus diagnosis.

Authors:  Sheena Wee; Asfa Alli-Shaik; Relus Kek; Hannah L F Swa; Wei-Ping Tien; Vanessa W Lim; Yee-Sin Leo; Lee-Ching Ng; Hapuarachchige C Hapuarachchi; Jayantha Gunaratne
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-18       Impact factor: 11.205

9.  Proteomic analysis profile of engineered articular cartilage with chondrogenic differentiated adipose tissue-derived stem cells loaded polyglycolic acid mesh for weight-bearing area defect repair.

Authors:  Lunli Gong; Xiao Zhou; Yaohao Wu; Yun Zhang; Chen Wang; Heng Zhou; Fangfang Guo; Lei Cui
Journal:  Tissue Eng Part A       Date:  2013-11-14       Impact factor: 3.845

10.  Characterization of the chondrocyte secretome in photoclickable poly(ethylene glycol) hydrogels.

Authors:  Margaret C Schneider; Christopher A Barnes; Stephanie J Bryant
Journal:  Biotechnol Bioeng       Date:  2017-05-12       Impact factor: 4.530

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