Literature DB >> 12836693

Evolution of signal transduction by gene and genome duplication in fish.

Jean-Nicolas Volff1, Manfred Schartl.   

Abstract

Fishes possess more genes encoding receptor tyrosine kinases from the epidermal growth factor receptor (EGFR) family than other organisms. Three of the four genes present in higher vertebrates have been duplicated early during the evolution of the ray-finned fish lineage possibly as a consequence of an event of whole genome duplication. In the fish Xiphophorus, a much more recent local event of gene duplication of the egfr co-orthologue egfr-b generated a eighth gene, the Xmrk oncogene. This duplicate acquired within a short time a constitutive activity and a pigment cell-specific overexpression responsible for the induction of melanoma in certain interspecific hybrids. Despite its frequent loss during evolution of the genus Xiphophorus, the maintenance of Xmrk in numerous species and its evolution under purifying selection suggest a so far unknown function under certain natural conditions. One of the known functions of Xmrk in tumor cells is the suppression of differentiation of melanocytes induced by the microphthalmia-associated transcription factor MITF. While only one gene with alternative 5' exons and promoters is present in higher vertebrates, two mitf genes were identified in fish. Subfunctionalization of mitf paralogues by differential degeneration of alternative exons and regulatory sequences led particularly to the formation of a mitf gene specifically expressed in the melanocyte lineage. These observations validate fish as an outstanding model to study the mechanisms and biological consequences of gene and genome duplication but underline the complexity of the fish model and the caution necessary in transferring knowledge from fish to higher vertebrates and vice versa.

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Year:  2003        PMID: 12836693

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  46 in total

Review 1.  Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions.

Authors:  A Meyer; M Schartl
Journal:  Curr Opin Cell Biol       Date:  1999-12       Impact factor: 8.382

Review 2.  Vertebrate evolution: recent perspectives from fish.

Authors:  S Aparicio
Journal:  Trends Genet       Date:  2000-02       Impact factor: 11.639

3.  Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history.

Authors:  A L Hughes
Journal:  J Mol Evol       Date:  1999-05       Impact factor: 2.395

Review 4.  Cell signaling by receptor tyrosine kinases.

Authors:  J Schlessinger
Journal:  Cell       Date:  2000-10-13       Impact factor: 41.582

Review 5.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

6.  Melanoma loss-of-function mutants in Xiphophorus caused by Xmrk-oncogene deletion and gene disruption by a transposable element.

Authors:  M Schartl; U Hornung; H Gutbrod; J N Volff; J Wittbrodt
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

7.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

8.  Biochemical characterization of the protein tyrosine kinase homology domain of the ErbB3 (HER3) receptor protein.

Authors:  S L Sierke; K Cheng; H H Kim; J G Koland
Journal:  Biochem J       Date:  1997-03-15       Impact factor: 3.857

9.  Subfunctionalization of duplicate mitf genes associated with differential degeneration of alternative exons in fish.

Authors:  Joachim Altschmied; Jacqueline Delfgaauw; Brigitta Wilde; Jutta Duschl; Laurence Bouneau; Jean-Nicolas Volff; Manfred Schartl
Journal:  Genetics       Date:  2002-05       Impact factor: 4.562

10.  Tumor suppression in Xiphophorus by an accidentally acquired promoter.

Authors:  D Adam; N Dimitrijevic; M Schartl
Journal:  Science       Date:  1993-02-05       Impact factor: 47.728

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  11 in total

1.  Evolutionary dynamics of the DM domain gene family in metazoans.

Authors:  Jean-Nicolas Volff; David Zarkower; Vivian J Bardwell; Manfred Schartl
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

2.  Selection for a dominant oncogene and large male size as a risk factor for melanoma in the Xiphophorus animal model.

Authors:  André A Fernandez; Paul R Bowser
Journal:  Mol Ecol       Date:  2010-08       Impact factor: 6.185

3.  Ultraviolet A does not induce melanomas in a Xiphophorus hybrid fish model.

Authors:  David L Mitchell; André A Fernandez; Rodney S Nairn; Rachel Garcia; Lakshmi Paniker; David Trono; Howard D Thames; Irma Gimenez-Conti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

4.  Natural hybridization reveals incompatible alleles that cause melanoma in swordtail fish.

Authors:  Daniel L Powell; Mateo García-Olazábal; Mackenzie Keegan; Patrick Reilly; Kang Du; Alejandra P Díaz-Loyo; Shreya Banerjee; Danielle Blakkan; David Reich; Peter Andolfatto; Gil G Rosenthal; Manfred Schartl; Molly Schumer
Journal:  Science       Date:  2020-05-15       Impact factor: 47.728

5.  Recent advances in sunlight-induced carcinogenesis using the Xiphophorus melanoma model.

Authors:  André A Fernandez; Lakshmi Paniker; Rachel Garcia; David L Mitchell
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2011-03-30       Impact factor: 3.228

6.  Functional divergence of two zebrafish midkine growth factors following fish-specific gene duplication.

Authors:  Christoph Winkler; Matthias Schafer; Jutta Duschl; Manfred Schartl; Jean-Nicolas Volff
Journal:  Genome Res       Date:  2003-05-12       Impact factor: 9.043

7.  Repertoire of Protein Kinases Encoded in the Genome of Takifugu rubripes.

Authors:  R Rakshambikai; S Yamunadevi; K Anamika; N Tyagi; N Srinivasan
Journal:  Comp Funct Genomics       Date:  2012-05-14

Review 8.  Xmrks the Spot: Fish Models for Investigating Epidermal Growth Factor Receptor Signaling in Cancer Research.

Authors:  Jerry D Monroe; Faiza Basheer; Yann Gibert
Journal:  Cells       Date:  2021-05-07       Impact factor: 6.600

9.  Structural and functional divergence of two fish aquaporin-1 water channels following teleost-specific gene duplication.

Authors:  Angèle Tingaud-Sequeira; François Chauvigné; Mercedes Fabra; Juanjo Lozano; Demetrio Raldúa; Joan Cerdà
Journal:  BMC Evol Biol       Date:  2008-09-23       Impact factor: 3.260

10.  Whole Genome Duplications Shaped the Receptor Tyrosine Kinase Repertoire of Jawed Vertebrates.

Authors:  Frédéric G Brunet; Jean-Nicolas Volff; Manfred Schartl
Journal:  Genome Biol Evol       Date:  2016-06-03       Impact factor: 3.416

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