Literature DB >> 12836373

X-ray analyses of DNA dodecamers containing 2'-deoxy-5-formyluridine.

M Tsunoda1, T Sakaue, S Naito, T Sunami, N Karino, Y Ueno, A Matsuda, A Takénaka.   

Abstract

It is known that formylation of thymine base induces purine transition in DNA replication. In order to establish the structural basis for such mutagenesis, crystal structures of two kinds of DNA dodecamers d(CGCGRATf5UCGCG) with f5U = 2'-deoxy-5-formyluridine and R = A or G have been determined. The f5U residues form a Watson-Crick-type pair with A and two types of pairs (wobble and reversed wobble) with G, the latter being the first example. Structural modeling suggests that the DNA polymerase can accept the reversed wobble pair with G, as well as the Watson-Crick pair with A.

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Year:  2001        PMID: 12836373     DOI: 10.1093/nass/1.1.279

Source DB:  PubMed          Journal:  Nucleic Acids Res Suppl


  4 in total

1.  Synthesis and biophysical analysis of modified thymine-containing DNA oligonucleotides.

Authors:  F Kawasaki; P Murat; Z Li; T Santner; S Balasubramanian
Journal:  Chem Commun (Camb)       Date:  2017-01-24       Impact factor: 6.222

2.  Mutational analysis of the damage-recognition and catalytic mechanism of human SMUG1 DNA glycosylase.

Authors:  Mayumi Matsubara; Tamon Tanaka; Hiroaki Terato; Eiji Ohmae; Shunsuke Izumi; Katsuo Katayanagi; Hiroshi Ide
Journal:  Nucleic Acids Res       Date:  2004-10-05       Impact factor: 16.971

Review 3.  Mutagenic potentials of damaged nucleic acids produced by reactive oxygen/nitrogen species: approaches using synthetic oligonucleotides and nucleotides: survey and summary.

Authors:  Hiroyuki Kamiya
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

4.  The Escherichia coli alkA Gene Is Activated to Alleviate Mutagenesis by an Oxidized Deoxynucleoside.

Authors:  Kristin Grøsvik; Almaz Nigatu Tesfahun; Izaskun Muruzábal-Lecumberri; Gyri Teien Haugland; Ingar Leiros; Peter Ruoff; Jan Terje Kvaløy; Ingeborg Knævelsrud; Hilde Ånensen; Marina Alexeeva; Kousuke Sato; Akira Matsuda; Ingrun Alseth; Arne Klungland; Svein Bjelland
Journal:  Front Microbiol       Date:  2020-02-25       Impact factor: 5.640

  4 in total

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