Literature DB >> 12835278

Calculation of helix packing angles in protein structures.

James A R Dalton1, Ioannis Michalopoulos, David R Westhead.   

Abstract

UNLABELLED: Software is presented for the calculation of packing angles and geometry of helical secondary structure elements in protein structures. AVAILABILITY: C language source code and documentation is available from http://www.bioinformatics.leeds.ac.uk.

Mesh：

Substances：

Year:  2003        PMID： 12835278     DOI： 10.1093/bioinformatics/btg141

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  12 in total

1.  TOPS: an enhanced database of protein structural topology.

Authors:  Ioannis Michalopoulos; Gilleain M Torrance; David R Gilbert; David R Westhead
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Bendix: intuitive helix geometry analysis and abstraction.

Authors:  Anna Caroline E Dahl; Matthieu Chavent; Mark S P Sansom
Journal:  Bioinformatics       Date:  2012-06-23       Impact factor: 6.937

3.  Membrane domain structures of three classes of histidine kinase receptors by cell-free expression and rapid NMR analysis.

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-24       Impact factor: 11.205

4.  Three clusters of conformational states in p450cam reveal a multistep pathway for closing of the substrate access channel.

Authors:  Young-Tae Lee; Edith C Glazer; Richard F Wilson; C David Stout; David B Goodin
Journal:  Biochemistry       Date:  2011-01-11       Impact factor: 3.162

5.  Conformational heterogeneity of karyopherin beta2 is segmental.

Authors:  Ahmet E Cansizoglu; Yuh Min Chook
Journal:  Structure       Date:  2007-11       Impact factor: 5.006

6.  Description of local and global shape properties of protein helices.

Authors:  Zhanyong Guo; Elfi Kraka; Dieter Cremer
Journal:  J Mol Model       Date:  2013-03-27       Impact factor: 1.810

7.  Facile backbone structure determination of human membrane proteins by NMR spectroscopy.

Authors:  Christian Klammt; Innokentiy Maslennikov; Monika Bayrhuber; Cédric Eichmann; Navratna Vajpai; Ellis Jeremy Chua Chiu; Katherine Y Blain; Luis Esquivies; June Hyun Jung Kwon; Bartosz Balana; Ursula Pieper; Andrej Sali; Paul A Slesinger; Witek Kwiatkowski; Roland Riek; Senyon Choe
Journal:  Nat Methods       Date:  2012-05-20       Impact factor: 28.547

8.  A periplasmic coiled-coil interface underlying TolC recruitment and the assembly of bacterial drug efflux pumps.

Authors:  Sune Lobedanz; Evert Bokma; Martyn F Symmons; Eva Koronakis; Colin Hughes; Vassilis Koronakis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-05       Impact factor: 11.205

9.  Protein structure prediction using residue- and fragment-environment potentials in CASP11.

Authors:  Hyungrae Kim; Daisuke Kihara
Journal:  Proteins       Date:  2015-09-22

10.  Quantifying conformational changes in GPCRs: glimpse of a common functional mechanism.

Authors:  James A R Dalton; Isaias Lans; Jesús Giraldo
Journal:  BMC Bioinformatics       Date:  2015-04-23       Impact factor: 3.169
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