Literature DB >> 12831908

Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes.

Michael Wagner1, Matthias Horn, Holger Daims.   

Abstract

Fluorescence in situ hybridisation with rRNA-targeted nucleic acid probes can be used to directly identify microorganisms within complex samples in a few hours and therefore has widespread application in environmental and medical microbiology. The past year has seen significant methodological improvements in fluorescence in situ hybridisation, as well as in the combination of this method with other techniques for inferring functional traits of microorganisms within their environment.

Mesh：

Year:  2003        PMID： 12831908     DOI： 10.1016/s1369-5274(03)00054-7

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN： 1369-5274            Impact factor:   7.934


  67 in total

Review 1.  Selected fluorescent techniques for identification of the physiological state of individual water and soil bacterial cells - review.

Authors:  S Lew; M Lew; T Mieszczyński; J Szarek
Journal:  Folia Microbiol (Praha)       Date:  2010-05-19       Impact factor: 2.099

2.  mathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization.

Authors:  L Safak Yilmaz; Shreyas Parnerkar; Daniel R Noguera
Journal:  Appl Environ Microbiol       Date:  2010-12-10       Impact factor: 4.792

3.  Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides.

Authors:  L Safak Yilmaz; Hatice E Okten; Daniel R Noguera
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

4.  Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization.

Authors:  L Safak Yilmaz; Daniel R Noguera
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

5.  Catalyzed reported deposition-fluorescence in situ hybridization protocol to evaluate phagotrophy in mixotrophic protists.

Authors:  Juan M Medina-Sánchez; Marisol Felip; Emilio O Casamayor
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

6.  Development of a rapid assay for determining the relative abundance of bacteria.

Authors:  Arlene K Rowan; Russell J Davenport; Jason R Snape; David Fearnside; Michael R Barer; Thomas P Curtis; Ian M Head
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Fluorescence in situ hybridization and spectral imaging of coral-associated bacterial communities.

Authors:  T D Ainsworth; M Fine; L L Blackall; O Hoegh-Guldberg
Journal:  Appl Environ Microbiol       Date:  2006-04       Impact factor: 4.792

8.  Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization.

Authors:  Irina Smolina; Charles Lee; Maxim Frank-Kamenetskii
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

Review 9.  The Gut Microbiome: Connecting Spatial Organization to Function.

Authors:  Carolina Tropini; Kristen A Earle; Kerwyn Casey Huang; Justin L Sonnenburg
Journal:  Cell Host Microbe       Date:  2017-04-12       Impact factor: 21.023

10.  Dynamic secondary ion mass spectrometry imaging of microbial populations utilizing C-labelled substrates in pure culture and in soil.

Authors:  Graham M Pumphrey; Buck T Hanson; Subhash Chandra; Eugene L Madsen
Journal:  Environ Microbiol       Date:  2008-09-22       Impact factor: 5.491
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