Literature DB >> 12831893

Protein informatics towards function identification.

Kengo Kinoshita1, Haruki Nakamura.   

Abstract

The study of structural genomics and structural proteomics has determined the tertiary structures of many hypothetical proteins, whose molecular functions could not be understood using conventional methods. In order to infer the geometrical location of the functional site, the biochemical function and the biological function of the hypothetical protein, much effort has been made in protein informatics. The importance of heterogeneous databases and various descriptors of amino acid sequences, tertiary structures and pathways on the proteome scale has been emphasised.

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Year:  2003        PMID: 12831893     DOI: 10.1016/s0959-440x(03)00074-5

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  21 in total

1.  Automated prediction of protein function and detection of functional sites from structure.

Authors:  Florencio Pazos; Michael J E Sternberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-29       Impact factor: 11.205

2.  The difficult road from sequence to function.

Authors:  Robert H White
Journal:  J Bacteriol       Date:  2006-05       Impact factor: 3.490

3.  Structure-based identification of catalytic residues.

Authors:  Ran Yahalom; Dan Reshef; Ayana Wiener; Sagiv Frankel; Nir Kalisman; Boaz Lerner; Chen Keasar
Journal:  Proteins       Date:  2011-04-12

4.  Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces.

Authors:  Surendra S Negi; Werner Braun
Journal:  J Mol Model       Date:  2007-09-09       Impact factor: 1.810

Review 5.  The proteome: structure, function and evolution.

Authors:  Keiran Fleming; Lawrence A Kelley; Suhail A Islam; Robert M MacCallum; Arne Muller; Florencio Pazos; Michael J E Sternberg
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

6.  Does computational biology help us to understand the molecular phylogenetics and evolution of cluster of differentiation (CD) proteins?

Authors:  Chiranjib Chakraborty; C George Priya Doss; Ritu Sharma; Subrata Sahana; Thumpi S Nair
Journal:  Protein J       Date:  2013-02       Impact factor: 2.371

7.  GalaxySite: ligand-binding-site prediction by using molecular docking.

Authors:  Lim Heo; Woong-Hee Shin; Myeong Sup Lee; Chaok Seok
Journal:  Nucleic Acids Res       Date:  2014-04-21       Impact factor: 16.971

8.  Ligand-binding site prediction of proteins based on known fragment-fragment interactions.

Authors:  Kota Kasahara; Kengo Kinoshita; Toshihisa Takagi
Journal:  Bioinformatics       Date:  2010-05-13       Impact factor: 6.937

9.  Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs.

Authors:  Alexandre Wohlkönig; Joëlle Huet; Yvan Looze; René Wintjens
Journal:  PLoS One       Date:  2010-11-09       Impact factor: 3.240

10.  A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.

Authors:  Torgeir R Hvidsten; Astrid Laegreid; Andriy Kryshtafovych; Gunnar Andersson; Krzysztof Fidelis; Jan Komorowski
Journal:  PLoS One       Date:  2009-07-15       Impact factor: 3.240

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