Literature DB >> 12831889

Gene selection in microarray data: the elephant, the blind men and our algorithms.

Gustavo Stolovitzky1.   

Abstract

Gene expression array data provide shadows of intricate cellular processes. Learning how to make the most of the information present in expression arrays has become a discipline in itself. In recent years, there has been an explosion of methods that analyze gene expression arrays to produce long lists of genes that express differentially in distinct cellular states. These lists will have to be organized, and the algorithms that produced them combined, if we wish to piece together the rich cellular structures probed by this high-throughput technology. Researchers will have to understand the benefits and limitations of the many existing methods to produce the combination of algorithms that best suits their gene expression experiments.

Entities:  

Mesh:

Year:  2003        PMID: 12831889     DOI: 10.1016/s0959-440x(03)00078-2

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  8 in total

1.  Classifying gene expression profiles from pairwise mRNA comparisons.

Authors:  Donald Geman; Christian d'Avignon; Daniel Q Naiman; Raimond L Winslow
Journal:  Stat Appl Genet Mol Biol       Date:  2004-08-30

2.  Translating bioinformatics in oncology: guilt-by-profiling analysis and identification of KIF18B and CDCA3 as novel driver genes in carcinogenesis.

Authors:  Timo Itzel; Peter Scholz; Thorsten Maass; Markus Krupp; Jens U Marquardt; Susanne Strand; Diana Becker; Frank Staib; Harald Binder; Stephanie Roessler; Xin Wei Wang; Snorri Thorgeirsson; Martina Müller; Peter R Galle; Andreas Teufel
Journal:  Bioinformatics       Date:  2014-09-18       Impact factor: 6.937

3.  Evaluating microarray-based classifiers: an overview.

Authors:  A-L Boulesteix; C Strobl; T Augustin; M Daumer
Journal:  Cancer Inform       Date:  2008-02-29

4.  Balancing Type One and Two Errors in Multiple Testing for Differential Expression of Genes.

Authors:  Alexander Gordon; Linlin Chen; Galina Glazko; Andrei Yakovlev
Journal:  Comput Stat Data Anal       Date:  2009-03-15       Impact factor: 1.681

5.  Assessing stability of gene selection in microarray data analysis.

Authors:  Xing Qiu; Yuanhui Xiao; Alexander Gordon; Andrei Yakovlev
Journal:  BMC Bioinformatics       Date:  2006-02-01       Impact factor: 3.169

6.  Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE.

Authors:  Satoshi Niijima; Satoru Kuhara
Journal:  BMC Bioinformatics       Date:  2006-12-25       Impact factor: 3.169

7.  Iterative Group Analysis (iGA): a simple tool to enhance sensitivity and facilitate interpretation of microarray experiments.

Authors:  Rainer Breitling; Anna Amtmann; Pawel Herzyk
Journal:  BMC Bioinformatics       Date:  2004-03-29       Impact factor: 3.169

8.  Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function.

Authors:  Weidong Tian; Lan V Zhang; Murat Taşan; Francis D Gibbons; Oliver D King; Julie Park; Zeba Wunderlich; J Michael Cherry; Frederick P Roth
Journal:  Genome Biol       Date:  2008-06-27       Impact factor: 13.583

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.