Literature DB >> 12824439

Update on XplorMed: A web server for exploring scientific literature.

Carolina Perez-Iratxeta1, Antonio J Pérez, Peer Bork, Miguel A Andrade.   

Abstract

As scientific literature databases like MEDLINE increase in size, so does the time required to search them. Scientists must frequently inspect long lists of references manually, often just reading the titles. XplorMed is a web tool that aids MEDLINE searching by summarizing the subjects contained in the results, thus allowing users to focus on subjects of interest. Here we describe new features added to XplorMed during the last 2 years (http://www.bork.embl-heidelberg.de/xplormed/).

Mesh：

Year:  2003        PMID： 12824439      PMCID： PMC168945          DOI： 10.1093/nar/gkg538

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  6 in total

1.  XplorMed: a tool for exploring MEDLINE abstracts.

Authors:  C Perez-Iratxeta; P Bork; M A Andrade
Journal:  Trends Biochem Sci       Date:  2001-09       Impact factor: 13.807

2.  Computing fuzzy associations for the analysis of biological literature.

Authors:  Carolina Perez-Iratxeta; Harindar S Keer; Peer Bork; Miguel A Andrade
Journal:  Biotechniques       Date:  2002-06       Impact factor: 1.993

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Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  Recent improvements to the SMART domain-based sequence annotation resource.

Authors:  Ivica Letunic; Leo Goodstadt; Nicholas J Dickens; Tobias Doerks; Joerg Schultz; Richard Mott; Francesca Ciccarelli; Richard R Copley; Chris P Ponting; Peer Bork
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts.

Authors:  W J Wilbur; Y Yang
Journal:  Comput Biol Med       Date:  1996-05       Impact factor: 4.589

6.  A heparin-binding domain in the amyloid protein precursor of Alzheimer's disease is involved in the regulation of neurite outgrowth.

Authors:  D H Small; V Nurcombe; G Reed; H Clarris; R Moir; K Beyreuther; C L Masters
Journal:  J Neurosci       Date:  1994-04       Impact factor: 6.167
  6 in total
  24 in total

1.  Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining.

Authors:  Hong Pan; Li Zuo; Vidhu Choudhary; Zhuo Zhang; Shoi Houi Leow; Fui Teen Chong; Yingliang Huang; Victor Wui Siong Ong; Bijayalaxmi Mohanty; Sin Lam Tan; S P T Krishnan; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  A document clustering and ranking system for exploring MEDLINE citations.

Authors:  Yongjing Lin; Wenyuan Li; Keke Chen; Ying Liu
Journal:  J Am Med Inform Assoc       Date:  2007-06-28       Impact factor: 4.497

3.  Prediction of similarities among rheumatic diseases.

Authors:  Pinar Yildirim; Cinar Ceken; Reza Hassanpour; Mehmet Resit Tolun
Journal:  J Med Syst       Date:  2010-11-03       Impact factor: 4.460

4.  Dragon Plant Biology Explorer. A text-mining tool for integrating associations between genetic and biochemical entities with genome annotation and biochemical terms lists.

Authors:  Vladimir B Bajic; Merlin Veronika; Pardha Sarathi Veladandi; Archana Meka; Mok-Wei Heng; Kanagasabai Rajaraman; Hong Pan; Sanjay Swarup
Journal:  Plant Physiol       Date:  2005-08       Impact factor: 8.340

Review 5.  Accessing biomedical literature in the current information landscape.

Authors:  Ritu Khare; Robert Leaman; Zhiyong Lu
Journal:  Methods Mol Biol       Date:  2014

6.  eFIP: a tool for mining functional impact of phosphorylation from literature.

Authors:  Cecilia N Arighi; Amy Y Siu; Catalina O Tudor; Jules A Nchoutmboube; Cathy H Wu; Vijay K Shanker
Journal:  Methods Mol Biol       Date:  2011

7.  GoWeb: a semantic search engine for the life science web.

Authors:  Heiko Dietze; Michael Schroeder
Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.169

8.  eGIFT: mining gene information from the literature.

Authors:  Catalina O Tudor; Carl J Schmidt; K Vijay-Shanker
Journal:  BMC Bioinformatics       Date:  2010-08-09       Impact factor: 3.169

9.  Comprehensive proteome analysis of an Apc mouse model uncovers proteins associated with intestinal tumorigenesis.

Authors:  Kenneth E Hung; Vitor Faca; Kenneth Song; David A Sarracino; Larissa Georgeon Richard; Bryan Krastins; Sara Forrester; Andrew Porter; Alexandra Kunin; Umar Mahmood; Brian B Haab; Samir M Hanash; Raju Kucherlapati
Journal:  Cancer Prev Res (Phila)       Date:  2009-02-24

10.  Clustering of PubMed abstracts using nearer terms of the domain.

Authors:  Mary Rajathei David; Selvaraj Samuel
Journal:  Bioinformation       Date:  2012-01-06
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