Literature DB >> 12824385

The web server of IBM's Bioinformatics and Pattern Discovery group.

Tien Huynh1, Isidore Rigoutsos, Laxmi Parida, Daniel Platt, Tetsuo Shibuya.   

Abstract

We herein present and discuss the services and content which are available on the web server of IBM's Bioinformatics and Pattern Discovery group. The server is operational around the clock and provides access to a variety of methods that have been published by the group's members and collaborators. The available tools correspond to applications ranging from the discovery of patterns in streams of events and the computation of multiple sequence alignments, to the discovery of genes in nucleic acid sequences and the interactive annotation of amino acid sequences. Additionally, annotations for more than 70 archaeal, bacterial, eukaryotic and viral genomes are available on-line and can be searched interactively. The tools and code bundles can be accessed beginning at http://cbcsrv.watson.ibm.com/Tspd.html whereas the genomics annotations are available at http://cbcsrv.watson.ibm.com/Annotations/.

Mesh:

Year:  2003        PMID: 12824385      PMCID: PMC169027          DOI: 10.1093/nar/gkg621

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  13 in total

1.  Building dictionaries of 1D and 3D motifs by mining the Unaligned 1D sequences of 17 archaeal and bacterial genomes.

Authors:  I Rigoutsos; Y Gao; A Floratos; L Parida
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1999

Review 2.  The emergence of pattern discovery techniques in computational biology.

Authors:  I Rigoutsos; A Floratos; L Parida; Y Gao; D Platt
Journal:  Metab Eng       Date:  2000-07       Impact factor: 9.783

3.  MUSCA: An Algorithm for Constrained Alignment of Multiple Data Sequences.

Authors: 
Journal:  Genome Inform Ser Workshop Genome Inform       Date:  1998

4.  Dictionary-driven prokaryotic gene finding.

Authors:  Tetsuo Shibuya; Isidore Rigoutsos
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

5.  Dictionary-driven protein annotation.

Authors:  Isidore Rigoutsos; Tien Huynh; Aris Floratos; Laxmi Parida; Daniel Platt
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

6.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 7.  Analysis of the protein-coding content of the sequence of human cytomegalovirus strain AD169.

Authors:  M S Chee; A T Bankier; S Beck; R Bohni; C M Brown; R Cerny; T Horsnell; C A Hutchison; T Kouzarides; J A Martignetti
Journal:  Curr Top Microbiol Immunol       Date:  1990       Impact factor: 4.291

8.  Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.

Authors:  I Rigoutsos; A Floratos
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

9.  Comparative molecular moment analysis (CoMMA): 3D-QSAR without molecular superposition.

Authors:  B D Silverman; D E Platt
Journal:  J Med Chem       Date:  1996-05-24       Impact factor: 7.446

10.  In silico structural and functional analysis of the human cytomegalovirus (HHV5) genome.

Authors:  J Novotny; I Rigoutsos; D Coleman; T Shenk
Journal:  J Mol Biol       Date:  2001-07-27       Impact factor: 5.469

View more
  1 in total

1.  The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update.

Authors:  Tien Huynh; Isidore Rigoutsos
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

  1 in total

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