Literature DB >> 11056059

The emergence of pattern discovery techniques in computational biology.

I Rigoutsos1, A Floratos, L Parida, Y Gao, D Platt.   

Abstract

In the past few years, pattern discovery has been emerging as a generic tool of choice for tackling problems from the computational biology domain. In this presentation, and after defining the problem in its generality, we review some of the algorithms that have appeared in the literature and describe several applications of pattern discovery to problems from computational biology. Copyright 2000 Academic Press.

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Year:  2000        PMID: 11056059     DOI: 10.1006/mben.2000.0151

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  11 in total

1.  Dictionary-driven prokaryotic gene finding.

Authors:  Tetsuo Shibuya; Isidore Rigoutsos
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

2.  In silico pattern-based analysis of the human cytomegalovirus genome.

Authors:  Isidore Rigoutsos; Jiri Novotny; Tien Huynh; Stephen T Chin-Bow; Laxmi Parida; Daniel Platt; David Coleman; Thomas Shenk
Journal:  J Virol       Date:  2003-04       Impact factor: 5.103

3.  Re-evaluation and in silico annotation of the Tupaia herpesvirus proteins.

Authors:  Udo Bahr; Gholamreza Darai
Journal:  Virus Genes       Date:  2004-01       Impact factor: 2.332

4.  The web server of IBM's Bioinformatics and Pattern Discovery group.

Authors:  Tien Huynh; Isidore Rigoutsos; Laxmi Parida; Daniel Platt; Tetsuo Shibuya
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  Dictionary-driven protein annotation.

Authors:  Isidore Rigoutsos; Tien Huynh; Aris Floratos; Laxmi Parida; Daniel Platt
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

6.  The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update.

Authors:  Tien Huynh; Isidore Rigoutsos
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

7.  Sequence signature analysis of chromosome identity in three Drosophila species.

Authors:  Per Stenberg; Fredrik Pettersson; Anja O Saura; Anders Berglund; Jan Larsson
Journal:  BMC Bioinformatics       Date:  2005-06-23       Impact factor: 3.169

8.  SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent.

Authors:  Norman E Davey; Denis C Shields; Richard J Edwards
Journal:  Nucleic Acids Res       Date:  2006-07-19       Impact factor: 16.971

9.  Evaluating deterministic motif significance measures in protein databases.

Authors:  Pedro Gabriel Ferreira; Paulo J Azevedo
Journal:  Algorithms Mol Biol       Date:  2007-12-24       Impact factor: 1.405

10.  SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA sequences.

Authors:  Fathi Elloumi; Martha Nason
Journal:  BMC Bioinformatics       Date:  2007-09-20       Impact factor: 3.169

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